Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2080 and Shewana3_2081 are separated by 106 nucleotides Shewana3_2081 and Shewana3_2082 are separated by 208 nucleotides
Shewana3_2080: Shewana3_2080 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 2,489,279 to 2,491,666
_2080
Shewana3_2081: Shewana3_2081 - sugar (glycoside-Pentoside-hexuronide) transporter (RefSeq), at 2,491,773 to 2,493,218
_2081
Shewana3_2082: Shewana3_2082 - arabinan endo-1,5-alpha-L-arabinosidase (RefSeq), at 2,493,427 to 2,494,497
_2082
Position (kb)
2491
2492
2493
2494 Strain fitness (log2 ratio)
-1
0
1
2 at 2490.967 kb on + strand, within Shewana3_2080 at 2490.977 kb on + strand, within Shewana3_2080 at 2490.982 kb on - strand, within Shewana3_2080 at 2490.992 kb on + strand, within Shewana3_2080 at 2491.017 kb on + strand, within Shewana3_2080 at 2491.031 kb on - strand, within Shewana3_2080 at 2491.375 kb on - strand, within Shewana3_2080 at 2491.667 kb on - strand at 2491.806 kb on - strand at 2492.007 kb on + strand, within Shewana3_2081 at 2492.060 kb on + strand, within Shewana3_2081 at 2492.263 kb on - strand, within Shewana3_2081 at 2492.476 kb on - strand, within Shewana3_2081 at 2492.572 kb on + strand, within Shewana3_2081 at 2492.929 kb on + strand, within Shewana3_2081 at 2493.767 kb on - strand, within Shewana3_2082 at 2493.973 kb on + strand, within Shewana3_2082 at 2493.974 kb on + strand, within Shewana3_2082 at 2494.192 kb on + strand, within Shewana3_2082
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 2,490,967 + Shewana3_2080 0.71 +0.1 2,490,977 + Shewana3_2080 0.71 -0.9 2,490,982 - Shewana3_2080 0.71 -0.6 2,490,992 + Shewana3_2080 0.72 -0.3 2,491,017 + Shewana3_2080 0.73 -0.3 2,491,031 - Shewana3_2080 0.73 +0.9 2,491,375 - Shewana3_2080 0.88 +0.3 2,491,667 - -1.1 2,491,806 - +0.7 2,492,007 + Shewana3_2081 0.16 +0.9 2,492,060 + Shewana3_2081 0.20 +2.1 2,492,263 - Shewana3_2081 0.34 +0.6 2,492,476 - Shewana3_2081 0.49 +0.1 2,492,572 + Shewana3_2081 0.55 +1.7 2,492,929 + Shewana3_2081 0.80 +0.7 2,493,767 - Shewana3_2082 0.32 -0.3 2,493,973 + Shewana3_2082 0.51 -0.3 2,493,974 + Shewana3_2082 0.51 +1.3 2,494,192 + Shewana3_2082 0.71 +2.4
Or see this region's nucleotide sequence