Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2063

Experiment: Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2062 and Shewana3_R0088 are separated by 80 nucleotidesShewana3_R0088 and Shewana3_2063 are separated by 403 nucleotidesShewana3_2063 and Shewana3_2064 are separated by 369 nucleotides Shewana3_2062: Shewana3_2062 - inner membrane transport protein YdhC (RefSeq), at 2,467,952 to 2,469,223 _2062 Shewana3_R0088: Shewana3_R0088 - tRNA-Ser (RefSeq), at 2,469,304 to 2,469,394 _R0088 Shewana3_2063: Shewana3_2063 - hypothetical protein (RefSeq), at 2,469,798 to 2,470,328 _2063 Shewana3_2064: Shewana3_2064 - ribulokinase (RefSeq), at 2,470,698 to 2,472,371 _2064 Position (kb) 2469 2470 2471Strain fitness (log2 ratio) -1 0 1at 2469.071 kb on + strand, within Shewana3_2062at 2469.553 kb on + strandat 2469.869 kb on - strand, within Shewana3_2063at 2470.007 kb on + strand, within Shewana3_2063at 2470.037 kb on + strand, within Shewana3_2063at 2470.196 kb on - strand, within Shewana3_2063at 2470.220 kb on + strand, within Shewana3_2063at 2470.324 kb on + strandat 2470.913 kb on - strand, within Shewana3_2064at 2471.182 kb on - strand, within Shewana3_2064at 2471.237 kb on - strand, within Shewana3_2064at 2471.241 kb on + strand, within Shewana3_2064at 2471.305 kb on - strand, within Shewana3_2064

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2.5 mM
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2,469,071 + Shewana3_2062 0.88 +0.5
2,469,553 + +0.3
2,469,869 - Shewana3_2063 0.13 +0.9
2,470,007 + Shewana3_2063 0.39 +0.1
2,470,037 + Shewana3_2063 0.45 +1.7
2,470,196 - Shewana3_2063 0.75 +0.1
2,470,220 + Shewana3_2063 0.79 +0.1
2,470,324 + +1.7
2,470,913 - Shewana3_2064 0.13 +1.7
2,471,182 - Shewana3_2064 0.29 -0.6
2,471,237 - Shewana3_2064 0.32 -0.3
2,471,241 + Shewana3_2064 0.32 -0.3
2,471,305 - Shewana3_2064 0.36 +1.7

Or see this region's nucleotide sequence