Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2022

Experiment: Vanillin 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2.5 mM
2,416,172	-				+1.7
2,416,187	-				-0.9
2,416,232	+				+1.7
2,416,268	+		Shewana3_2021	0.12	+1.7
2,416,268	+		Shewana3_2021	0.12	-0.3
2,416,270	+		Shewana3_2021	0.12	+1.7
2,416,299	+		Shewana3_2021	0.16	+1.7
2,416,299	+		Shewana3_2021	0.16	+0.7
2,416,307	-		Shewana3_2021	0.16	+1.7
2,416,312	+		Shewana3_2021	0.17	+1.1
2,416,372	+		Shewana3_2021	0.24	+1.7
2,416,372	+		Shewana3_2021	0.24	+1.7
2,416,372	+		Shewana3_2021	0.24	+0.1
2,416,380	-		Shewana3_2021	0.25	-0.3
2,416,380	-		Shewana3_2021	0.25	+1.7
2,416,398	-		Shewana3_2021	0.27	-0.6
2,416,398	-		Shewana3_2021	0.27	+0.7
2,416,410	+		Shewana3_2021	0.28	+0.7
2,416,410	+		Shewana3_2021	0.28	+1.7
2,416,425	-		Shewana3_2021	0.30	+0.1
2,416,426	-		Shewana3_2021	0.30	-0.3
2,416,431	-		Shewana3_2021	0.31	+0.7
2,416,431	-		Shewana3_2021	0.31	+0.1
2,416,431	-		Shewana3_2021	0.31	+1.7
2,416,431	-		Shewana3_2021	0.31	-1.1
2,416,431	-		Shewana3_2021	0.31	+0.1
2,416,432	-		Shewana3_2021	0.31	+0.5
2,416,434	+		Shewana3_2021	0.31	+0.1
2,416,436	-		Shewana3_2021	0.31	+1.7
2,416,436	-		Shewana3_2021	0.31	+1.7
2,416,442	-		Shewana3_2021	0.32	+1.7
2,416,507	+		Shewana3_2021	0.40	+0.7
2,416,507	+		Shewana3_2021	0.40	-0.3
2,416,515	-		Shewana3_2021	0.41	+1.7
2,416,515	-		Shewana3_2021	0.41	+0.4
2,416,520	-		Shewana3_2021	0.41	+0.1
2,416,530	+		Shewana3_2021	0.42	+0.1
2,416,530	+		Shewana3_2021	0.42	+1.7
2,416,540	+		Shewana3_2021	0.43	+1.7
2,416,541	+		Shewana3_2021	0.44	+0.1
2,416,548	-		Shewana3_2021	0.44	+1.7
2,416,548	-		Shewana3_2021	0.44	+1.7
2,416,549	-		Shewana3_2021	0.44	-0.5
2,416,549	-		Shewana3_2021	0.44	-1.1
2,416,549	-		Shewana3_2021	0.44	+0.1
2,416,572	-		Shewana3_2021	0.47	+1.7
2,416,572	-		Shewana3_2021	0.47	+1.7
2,416,580	+		Shewana3_2021	0.48	+0.7
2,416,586	-		Shewana3_2021	0.49	+0.7
2,416,586	-		Shewana3_2021	0.49	+1.7
2,416,586	-		Shewana3_2021	0.49	+0.1
2,416,586	-		Shewana3_2021	0.49	+0.7
2,416,586	-		Shewana3_2021	0.49	+0.7
2,416,586	-		Shewana3_2021	0.49	+1.7
2,416,598	-		Shewana3_2021	0.50	+0.7
2,416,612	+		Shewana3_2021	0.52	+1.7
2,416,631	-		Shewana3_2021	0.54	+1.7
2,416,631	-		Shewana3_2021	0.54	+0.7
2,416,635	+		Shewana3_2021	0.54	+1.7
2,416,635	+		Shewana3_2021	0.54	+0.7
2,416,643	-		Shewana3_2021	0.55	+1.7
2,416,643	-		Shewana3_2021	0.55	+0.1
2,416,693	+		Shewana3_2021	0.61	-0.7
2,416,693	+		Shewana3_2021	0.61	+0.1
2,416,693	+		Shewana3_2021	0.61	+1.7
2,416,693	+		Shewana3_2021	0.61	+0.7
2,416,693	+		Shewana3_2021	0.61	+0.1
2,416,693	+		Shewana3_2021	0.61	-2.1
2,416,694	+		Shewana3_2021	0.61	+0.1
2,416,694	+		Shewana3_2021	0.61	+1.7
2,416,701	-		Shewana3_2021	0.62	+0.1
2,416,702	-		Shewana3_2021	0.62	+0.7
2,416,702	-		Shewana3_2021	0.62	-0.3
2,416,718	+		Shewana3_2021	0.64	+0.7
2,416,718	+		Shewana3_2021	0.64	+0.1
2,416,718	+		Shewana3_2021	0.64	+1.7
2,416,718	+		Shewana3_2021	0.64	+0.7
2,416,718	+		Shewana3_2021	0.64	-0.3
2,416,718	+		Shewana3_2021	0.64	+0.1
2,416,726	-		Shewana3_2021	0.65	+0.4
2,416,726	-		Shewana3_2021	0.65	+0.7
2,416,726	-		Shewana3_2021	0.65	-0.6
2,416,726	-		Shewana3_2021	0.65	+0.7
2,416,728	-		Shewana3_2021	0.65	+0.7
2,416,764	+		Shewana3_2021	0.69	+0.1
2,416,795	-		Shewana3_2021	0.73	-1.3
2,416,795	-		Shewana3_2021	0.73	-0.6
2,416,805	-		Shewana3_2021	0.74	-1.4
2,416,813	-		Shewana3_2021	0.75	+1.7
2,416,836	+		Shewana3_2021	0.78	+1.7
2,416,849	-		Shewana3_2021	0.79	+1.7
2,416,849	-		Shewana3_2021	0.79	-0.6
2,416,854	+		Shewana3_2021	0.80	+3.3
2,416,875	+		Shewana3_2021	0.82	+1.7
2,416,881	+		Shewana3_2021	0.83	-0.3
2,416,882	+		Shewana3_2021	0.83	+1.7
2,416,882	+		Shewana3_2021	0.83	+1.7
2,416,882	+		Shewana3_2021	0.83	-0.3
2,416,882	+		Shewana3_2021	0.83	+0.7
2,416,890	-		Shewana3_2021	0.84	-0.5
2,416,890	-		Shewana3_2021	0.84	+0.1
2,416,890	-		Shewana3_2021	0.84	+0.7
2,416,890	-		Shewana3_2021	0.84	+1.7
2,416,890	-		Shewana3_2021	0.84	+1.7
2,416,890	-		Shewana3_2021	0.84	+0.7
2,416,890	-		Shewana3_2021	0.84	+2.1
2,416,890	-		Shewana3_2021	0.84	+1.7
2,416,900	-		Shewana3_2021	0.85	-0.6
2,416,914	+		Shewana3_2021	0.87	-0.9
2,416,916	+		Shewana3_2021	0.87	-0.5
2,416,922	-		Shewana3_2021	0.88	+0.7
2,416,989	+				-0.5
2,417,006	-				+0.6
2,417,012	+				-0.3
2,417,020	-				+0.1
2,417,020	-				+1.7
2,417,020	-				-0.3
2,417,020	-				+1.7
2,417,026	+				+0.1
2,417,026	+				+0.7
2,417,034	-				-1.6
2,417,034	-				+0.7
2,417,060	-				+0.7
2,417,089	+				+0.2
2,417,104	+				-0.1
2,417,113	+				+1.7
2,417,120	+				-1.1
2,417,128	-				+0.7
2,417,150	+		Shewana3_2022	0.11	+1.7
2,417,158	-		Shewana3_2022	0.11	+0.1
2,417,175	+		Shewana3_2022	0.13	+0.7
2,417,183	+		Shewana3_2022	0.13	+0.1
2,417,201	+		Shewana3_2022	0.15	+1.2
2,417,201	+		Shewana3_2022	0.15	+1.7
2,417,201	+		Shewana3_2022	0.15	+0.7
2,417,201	+		Shewana3_2022	0.15	+1.7
2,417,207	-		Shewana3_2022	0.15	+0.7
2,417,209	-		Shewana3_2022	0.15	-0.0
2,417,209	-		Shewana3_2022	0.15	-0.3
2,417,209	-		Shewana3_2022	0.15	+2.7
2,417,211	+		Shewana3_2022	0.16	-1.1
2,417,216	+		Shewana3_2022	0.16	+1.7
2,417,216	+		Shewana3_2022	0.16	+1.7
2,417,224	-		Shewana3_2022	0.17	-1.1
2,417,261	+		Shewana3_2022	0.20	+1.7
2,417,269	-		Shewana3_2022	0.20	+0.1
2,417,310	-		Shewana3_2022	0.24	-1.3
2,417,310	-		Shewana3_2022	0.24	+0.1
2,417,310	-		Shewana3_2022	0.24	-1.5
2,417,312	-		Shewana3_2022	0.24	+0.7
2,417,315	-		Shewana3_2022	0.24	-0.6
2,417,340	-		Shewana3_2022	0.26	-2.3
2,417,424	+		Shewana3_2022	0.33	+0.7
2,417,432	-		Shewana3_2022	0.34	+1.7
2,417,516	+		Shewana3_2022	0.40	-0.3
2,417,518	+		Shewana3_2022	0.41	+1.7
2,417,534	-		Shewana3_2022	0.42	-0.9
2,417,534	-		Shewana3_2022	0.42	+1.7
2,417,536	-		Shewana3_2022	0.42	+2.7
2,417,668	+		Shewana3_2022	0.53	+0.1
2,417,668	+		Shewana3_2022	0.53	+1.7
2,417,668	+		Shewana3_2022	0.53	+0.1
2,417,676	-		Shewana3_2022	0.54	+0.1
2,417,684	+		Shewana3_2022	0.54	+1.7
2,417,684	+		Shewana3_2022	0.54	+1.7
2,417,772	+		Shewana3_2022	0.61	+1.7
2,417,772	+		Shewana3_2022	0.61	+0.7
2,417,772	+		Shewana3_2022	0.61	-1.5
2,417,780	-		Shewana3_2022	0.62	-2.0
2,417,780	-		Shewana3_2022	0.62	-1.1
2,417,780	-		Shewana3_2022	0.62	+0.1
2,417,793	+		Shewana3_2022	0.63	+1.7
2,417,801	-		Shewana3_2022	0.64	-1.9
2,417,802	-		Shewana3_2022	0.64	+1.7
2,417,840	-		Shewana3_2022	0.67	+1.7
2,417,851	-		Shewana3_2022	0.68	+0.7
2,417,945	-		Shewana3_2022	0.75	-1.7
2,417,982	+		Shewana3_2022	0.79	-0.6
2,417,989	-		Shewana3_2022	0.79	+0.1
2,418,011	+		Shewana3_2022	0.81	+0.4
2,418,011	-		Shewana3_2022	0.81	-0.2
2,418,026	-		Shewana3_2022	0.82	-0.9
2,418,182	+				+1.7
2,418,183	-				+0.3
2,418,183	-				-0.3
2,418,229	+				+0.7
2,418,237	-				+0.0
2,418,237	-				-0.7
2,418,237	-				+0.2
2,418,246	+				+0.7
2,418,285	-		Shewana3_2023	0.20	+0.1
2,418,398	-		Shewana3_2023	0.68	+0.1
2,418,408	+		Shewana3_2023	0.72	+0.1
2,418,425	+		Shewana3_2023	0.79	+1.3
2,418,425	+		Shewana3_2023	0.79	+0.5
2,418,464	-				-2.0
2,418,471	+				+0.1
2,418,567	+				+1.7
2,418,918	-				+1.7
2,418,986	+				-0.3
2,418,999	-				+2.5
2,419,075	+				+0.7
2,419,083	-				-0.6
2,419,123	+				+0.3
2,419,125	-				+0.7
2,419,131	-				+0.7
2,419,136	+				-1.4
2,419,144	-				+0.7
2,419,144	-				+0.7