Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1695

Experiment: Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1694 and Shewana3_1695 are separated by 108 nucleotidesShewana3_1695 and Shewana3_1696 are separated by 102 nucleotidesShewana3_1696 and Shewana3_1697 are separated by 81 nucleotides Shewana3_1694: Shewana3_1694 - alcohol dehydrogenase (RefSeq), at 1,992,984 to 1,994,030 _1694 Shewana3_1695: Shewana3_1695 - cupin 2 domain-containing protein (RefSeq), at 1,994,139 to 1,994,576 _1695 Shewana3_1696: Shewana3_1696 - hypothetical protein (RefSeq), at 1,994,679 to 1,995,053 _1696 Shewana3_1697: Shewana3_1697 - cupin 2 domain-containing protein (RefSeq), at 1,995,135 to 1,995,674 _1697 Position (kb) 1994 1995Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1993.146 kb on + strand, within Shewana3_1694at 1993.152 kb on - strand, within Shewana3_1694at 1993.158 kb on + strand, within Shewana3_1694at 1993.213 kb on + strand, within Shewana3_1694at 1993.221 kb on - strand, within Shewana3_1694at 1993.251 kb on - strand, within Shewana3_1694at 1993.259 kb on - strand, within Shewana3_1694at 1993.312 kb on + strand, within Shewana3_1694at 1993.323 kb on + strand, within Shewana3_1694at 1993.331 kb on - strand, within Shewana3_1694at 1993.331 kb on - strand, within Shewana3_1694at 1993.356 kb on - strand, within Shewana3_1694at 1993.446 kb on + strand, within Shewana3_1694at 1993.446 kb on + strand, within Shewana3_1694at 1993.446 kb on + strand, within Shewana3_1694at 1993.446 kb on + strand, within Shewana3_1694at 1993.446 kb on + strand, within Shewana3_1694at 1993.454 kb on - strand, within Shewana3_1694at 1993.454 kb on - strand, within Shewana3_1694at 1993.454 kb on - strand, within Shewana3_1694at 1993.598 kb on - strand, within Shewana3_1694at 1993.598 kb on - strand, within Shewana3_1694at 1993.598 kb on - strand, within Shewana3_1694at 1993.598 kb on - strand, within Shewana3_1694at 1993.732 kb on + strand, within Shewana3_1694at 1993.732 kb on + strand, within Shewana3_1694at 1993.740 kb on - strand, within Shewana3_1694at 1993.775 kb on + strand, within Shewana3_1694at 1993.786 kb on + strand, within Shewana3_1694at 1993.879 kb on + strand, within Shewana3_1694at 1993.933 kb on - strandat 1993.957 kb on - strandat 1994.108 kb on + strandat 1994.319 kb on - strand, within Shewana3_1695at 1994.530 kb on - strand, within Shewana3_1695at 1994.783 kb on + strand, within Shewana3_1696at 1994.812 kb on + strand, within Shewana3_1696at 1994.965 kb on - strand, within Shewana3_1696at 1995.049 kb on - strandat 1995.270 kb on + strand, within Shewana3_1697at 1995.398 kb on + strand, within Shewana3_1697at 1995.553 kb on + strand, within Shewana3_1697

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2.5 mM
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1,993,146 + Shewana3_1694 0.15 -0.0
1,993,152 - Shewana3_1694 0.16 +0.0
1,993,158 + Shewana3_1694 0.17 -0.1
1,993,213 + Shewana3_1694 0.22 +0.1
1,993,221 - Shewana3_1694 0.23 -0.9
1,993,251 - Shewana3_1694 0.26 -0.3
1,993,259 - Shewana3_1694 0.26 +1.7
1,993,312 + Shewana3_1694 0.31 +0.3
1,993,323 + Shewana3_1694 0.32 +1.0
1,993,331 - Shewana3_1694 0.33 -0.3
1,993,331 - Shewana3_1694 0.33 +0.3
1,993,356 - Shewana3_1694 0.36 +0.7
1,993,446 + Shewana3_1694 0.44 +3.4
1,993,446 + Shewana3_1694 0.44 -0.9
1,993,446 + Shewana3_1694 0.44 +0.7
1,993,446 + Shewana3_1694 0.44 -1.2
1,993,446 + Shewana3_1694 0.44 +0.0
1,993,454 - Shewana3_1694 0.45 +1.7
1,993,454 - Shewana3_1694 0.45 +0.1
1,993,454 - Shewana3_1694 0.45 +0.7
1,993,598 - Shewana3_1694 0.59 -1.2
1,993,598 - Shewana3_1694 0.59 +0.1
1,993,598 - Shewana3_1694 0.59 +0.7
1,993,598 - Shewana3_1694 0.59 +1.7
1,993,732 + Shewana3_1694 0.71 +0.6
1,993,732 + Shewana3_1694 0.71 -0.8
1,993,740 - Shewana3_1694 0.72 -0.0
1,993,775 + Shewana3_1694 0.76 +0.5
1,993,786 + Shewana3_1694 0.77 +0.6
1,993,879 + Shewana3_1694 0.85 +0.1
1,993,933 - +0.4
1,993,957 - +1.7
1,994,108 + -0.5
1,994,319 - Shewana3_1695 0.41 -2.0
1,994,530 - Shewana3_1695 0.89 +1.7
1,994,783 + Shewana3_1696 0.28 +1.7
1,994,812 + Shewana3_1696 0.35 -1.0
1,994,965 - Shewana3_1696 0.76 -0.3
1,995,049 - +0.5
1,995,270 + Shewana3_1697 0.25 -0.0
1,995,398 + Shewana3_1697 0.49 +2.7
1,995,553 + Shewana3_1697 0.77 +0.1

Or see this region's nucleotide sequence