Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0824 and Shewana3_0825 are separated by 133 nucleotides Shewana3_0825 and Shewana3_0826 are separated by 107 nucleotides Shewana3_0826 and Shewana3_0827 are separated by 149 nucleotides Shewana3_0827 and Shewana3_0828 are separated by 12 nucleotides
Shewana3_0824: Shewana3_0824 - Ion transport 2 domain-containing protein (RefSeq), at 955,599 to 956,423
_0824
Shewana3_0825: Shewana3_0825 - hypothetical protein (RefSeq), at 956,557 to 956,886
_0825
Shewana3_0826: Shewana3_0826 - hypothetical protein (RefSeq), at 956,994 to 957,647
_0826
Shewana3_0827: Shewana3_0827 - phage shock protein A, PspA (RefSeq), at 957,797 to 958,486
_0827
Shewana3_0828: Shewana3_0828 - hypothetical protein (RefSeq), at 958,499 to 958,912
_0828
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2 at 956.009 kb on - strand, within Shewana3_0824 at 956.024 kb on + strand, within Shewana3_0824 at 956.134 kb on - strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.402 kb on + strand at 956.586 kb on - strand at 956.703 kb on - strand, within Shewana3_0825 at 956.861 kb on + strand at 957.042 kb on + strand at 957.167 kb on + strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.442 kb on + strand, within Shewana3_0826 at 957.442 kb on + strand, within Shewana3_0826 at 957.568 kb on - strand, within Shewana3_0826 at 957.653 kb on + strand at 957.661 kb on - strand at 957.663 kb on - strand at 957.663 kb on - strand at 957.881 kb on - strand, within Shewana3_0827 at 958.002 kb on - strand at 958.366 kb on - strand, within Shewana3_0827 at 958.366 kb on - strand, within Shewana3_0827 at 958.432 kb on - strand at 958.531 kb on + strand at 958.539 kb on - strand at 958.555 kb on - strand, within Shewana3_0828 at 958.562 kb on + strand, within Shewana3_0828 at 958.622 kb on - strand, within Shewana3_0828
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 956,009 - Shewana3_0824 0.50 -0.3 956,024 + Shewana3_0824 0.52 -0.1 956,134 - Shewana3_0824 0.65 +0.4 956,306 + Shewana3_0824 0.86 +2.1 956,306 + Shewana3_0824 0.86 -0.3 956,402 + +0.5 956,586 - -0.0 956,703 - Shewana3_0825 0.44 +0.1 956,861 + -1.3 957,042 + -1.3 957,167 + Shewana3_0826 0.26 -0.5 957,217 - Shewana3_0826 0.34 +0.4 957,217 - Shewana3_0826 0.34 -2.0 957,217 - Shewana3_0826 0.34 -0.1 957,442 + Shewana3_0826 0.69 -1.0 957,442 + Shewana3_0826 0.69 -0.6 957,568 - Shewana3_0826 0.88 -1.6 957,653 + +0.5 957,661 - +0.2 957,663 - +0.3 957,663 - -0.1 957,881 - Shewana3_0827 0.12 -0.5 958,002 - +1.5 958,366 - Shewana3_0827 0.82 -1.1 958,366 - Shewana3_0827 0.82 -1.5 958,432 - -2.3 958,531 + -1.8 958,539 - -0.5 958,555 - Shewana3_0828 0.14 -0.3 958,562 + Shewana3_0828 0.15 +0.5 958,622 - Shewana3_0828 0.30 -0.1
Or see this region's nucleotide sequence