Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0815 and Shewana3_0816 are separated by 92 nucleotides Shewana3_0816 and Shewana3_0817 are separated by 96 nucleotides Shewana3_0817 and Shewana3_0818 are separated by 876 nucleotides
Shewana3_0815: Shewana3_0815 - IS4 family transposase (RefSeq), at 943,094 to 944,707
_0815
Shewana3_0816: Shewana3_0816 - DNA binding domain-containing protein (RefSeq), at 944,800 to 944,979
_0816
Shewana3_0817: Shewana3_0817 - hypothetical protein (RefSeq), at 945,076 to 945,810
_0817
Shewana3_0818: Shewana3_0818 - hypothetical protein (RefSeq), at 946,687 to 947,175
_0818
Position (kb) 945
946 Strain fitness (log2 ratio) -2
-1
0
1 at 944.892 kb on - strand, within Shewana3_0816 at 944.935 kb on - strand, within Shewana3_0816 at 945.013 kb on - strand at 945.088 kb on + strand at 945.541 kb on - strand, within Shewana3_0817 at 945.901 kb on - strand at 945.963 kb on - strand at 946.012 kb on + strand at 946.274 kb on + strand at 946.299 kb on + strand at 946.299 kb on + strand at 946.299 kb on + strand at 946.319 kb on + strand at 946.319 kb on + strand at 946.544 kb on - strand at 946.591 kb on + strand at 946.591 kb on + strand at 946.726 kb on - strand at 946.809 kb on - strand, within Shewana3_0818
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 944,892 - Shewana3_0816 0.51 -0.5 944,935 - Shewana3_0816 0.75 +0.0 945,013 - -0.1 945,088 + +0.0 945,541 - Shewana3_0817 0.63 -1.5 945,901 - -1.8 945,963 - -0.3 946,012 + -0.0 946,274 + +0.4 946,299 + +0.3 946,299 + +0.5 946,299 + -0.0 946,319 + +0.2 946,319 + +0.3 946,544 - -0.4 946,591 + -0.0 946,591 + -0.6 946,726 - -0.4 946,809 - Shewana3_0818 0.25 -1.1
Or see this region's nucleotide sequence