Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0468 and uvrD are separated by 171 nucleotides uvrD and ubiA are separated by 125 nucleotides
Shewana3_0468: Shewana3_0468 - putative transcriptional regulator, CadC (RefSeq), at 543,640 to 544,560
_0468
Shewana3_0469: uvrD - DNA-dependent helicase II (RefSeq), at 544,732 to 546,900
uvrD
Shewana3_0470: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 547,026 to 547,886
ubiA
Position (kb) 544
545
546
547 Strain fitness (log2 ratio) -2
-1
0
1 at 543.760 kb on + strand, within Shewana3_0468 at 543.770 kb on - strand, within Shewana3_0468 at 543.812 kb on + strand, within Shewana3_0468 at 543.925 kb on + strand, within Shewana3_0468 at 544.067 kb on + strand, within Shewana3_0468 at 544.091 kb on + strand, within Shewana3_0468 at 544.151 kb on + strand, within Shewana3_0468 at 544.160 kb on + strand, within Shewana3_0468 at 544.170 kb on - strand, within Shewana3_0468 at 544.321 kb on + strand, within Shewana3_0468 at 544.391 kb on - strand, within Shewana3_0468 at 544.396 kb on - strand, within Shewana3_0468 at 544.439 kb on - strand, within Shewana3_0468 at 544.444 kb on - strand, within Shewana3_0468 at 544.487 kb on - strand at 544.678 kb on - strand at 544.800 kb on - strand at 544.865 kb on + strand at 544.953 kb on + strand, within uvrD at 544.989 kb on + strand, within uvrD at 545.014 kb on - strand, within uvrD at 545.042 kb on - strand, within uvrD at 545.393 kb on + strand, within uvrD at 545.401 kb on - strand, within uvrD at 545.458 kb on - strand, within uvrD at 545.900 kb on - strand, within uvrD at 546.153 kb on - strand, within uvrD at 546.192 kb on - strand, within uvrD at 546.331 kb on + strand, within uvrD at 546.364 kb on + strand, within uvrD at 546.381 kb on + strand, within uvrD at 546.396 kb on + strand, within uvrD at 546.452 kb on + strand, within uvrD at 546.543 kb on - strand, within uvrD at 546.929 kb on + strand at 546.929 kb on + strand at 546.937 kb on - strand at 546.937 kb on - strand at 547.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 543,760 + Shewana3_0468 0.13 +0.2 543,770 - Shewana3_0468 0.14 -1.3 543,812 + Shewana3_0468 0.19 -0.3 543,925 + Shewana3_0468 0.31 +0.1 544,067 + Shewana3_0468 0.46 -0.2 544,091 + Shewana3_0468 0.49 -0.3 544,151 + Shewana3_0468 0.55 -0.9 544,160 + Shewana3_0468 0.56 -0.2 544,170 - Shewana3_0468 0.58 -0.6 544,321 + Shewana3_0468 0.74 -0.4 544,391 - Shewana3_0468 0.82 +0.2 544,396 - Shewana3_0468 0.82 -0.8 544,439 - Shewana3_0468 0.87 -0.4 544,444 - Shewana3_0468 0.87 +0.3 544,487 - -0.1 544,678 - -0.3 544,800 - -0.0 544,865 + -1.1 544,953 + uvrD Shewana3_0469 0.10 -1.4 544,989 + uvrD Shewana3_0469 0.12 -0.5 545,014 - uvrD Shewana3_0469 0.13 -1.3 545,042 - uvrD Shewana3_0469 0.14 +1.0 545,393 + uvrD Shewana3_0469 0.30 +0.3 545,401 - uvrD Shewana3_0469 0.31 -1.5 545,458 - uvrD Shewana3_0469 0.33 -2.2 545,900 - uvrD Shewana3_0469 0.54 -0.6 546,153 - uvrD Shewana3_0469 0.66 -1.0 546,192 - uvrD Shewana3_0469 0.67 -0.8 546,331 + uvrD Shewana3_0469 0.74 -1.0 546,364 + uvrD Shewana3_0469 0.75 -0.7 546,381 + uvrD Shewana3_0469 0.76 -1.5 546,396 + uvrD Shewana3_0469 0.77 -0.6 546,452 + uvrD Shewana3_0469 0.79 -0.7 546,543 - uvrD Shewana3_0469 0.83 -1.5 546,929 + +0.3 546,929 + +0.0 546,937 - -0.2 546,937 - -0.5 547,888 - -1.2
Or see this region's nucleotide sequence