Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkA and Shewana3_0033 are separated by 15 nucleotides Shewana3_0033 and Shewana3_0034 overlap by 1 nucleotides Shewana3_0034 and def are separated by 15 nucleotides
Shewana3_0032: trkA - potassium transporter peripheral membrane component (RefSeq), at 38,658 to 40,067
trkA
Shewana3_0033: Shewana3_0033 - sun protein (RefSeq), at 40,083 to 41,372
_0033
Shewana3_0034: Shewana3_0034 - methionyl-tRNA formyltransferase (RefSeq), at 41,372 to 42,328
_0034
Shewana3_0035: def - peptide deformylase (RefSeq), at 42,344 to 42,850
def
Position (kb) 40
41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 40.163 kb on - strand at 40.189 kb on - strand at 40.411 kb on + strand, within Shewana3_0033 at 40.414 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.443 kb on + strand, within Shewana3_0033 at 40.451 kb on - strand, within Shewana3_0033 at 40.583 kb on + strand, within Shewana3_0033 at 40.677 kb on + strand, within Shewana3_0033 at 40.685 kb on - strand, within Shewana3_0033 at 40.772 kb on - strand, within Shewana3_0033 at 40.814 kb on - strand, within Shewana3_0033 at 40.875 kb on + strand, within Shewana3_0033 at 40.889 kb on + strand, within Shewana3_0033 at 40.934 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.966 kb on - strand, within Shewana3_0033 at 40.978 kb on + strand, within Shewana3_0033 at 41.020 kb on + strand, within Shewana3_0033 at 41.030 kb on + strand, within Shewana3_0033 at 41.094 kb on + strand, within Shewana3_0033 at 41.152 kb on + strand, within Shewana3_0033 at 41.210 kb on + strand, within Shewana3_0033 at 41.218 kb on - strand, within Shewana3_0033 at 41.252 kb on + strand at 41.302 kb on + strand at 41.330 kb on - strand at 41.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 40,163 - -0.5 40,189 - -0.8 40,411 + Shewana3_0033 0.25 -3.8 40,414 - Shewana3_0033 0.26 -0.3 40,419 - Shewana3_0033 0.26 -0.4 40,419 - Shewana3_0033 0.26 -1.5 40,443 + Shewana3_0033 0.28 -2.3 40,451 - Shewana3_0033 0.29 -0.6 40,583 + Shewana3_0033 0.39 -1.5 40,677 + Shewana3_0033 0.46 -1.1 40,685 - Shewana3_0033 0.47 -1.1 40,772 - Shewana3_0033 0.53 -0.9 40,814 - Shewana3_0033 0.57 -1.1 40,875 + Shewana3_0033 0.61 -1.8 40,889 + Shewana3_0033 0.62 -1.3 40,934 + Shewana3_0033 0.66 -1.5 40,958 + Shewana3_0033 0.68 -1.3 40,958 + Shewana3_0033 0.68 -0.8 40,966 - Shewana3_0033 0.68 -0.6 40,978 + Shewana3_0033 0.69 -0.9 41,020 + Shewana3_0033 0.73 -1.0 41,030 + Shewana3_0033 0.73 -1.1 41,094 + Shewana3_0033 0.78 -0.3 41,152 + Shewana3_0033 0.83 -1.3 41,210 + Shewana3_0033 0.87 -0.6 41,218 - Shewana3_0033 0.88 -0.0 41,252 + -1.5 41,302 + -1.8 41,330 - -1.4 41,404 + -1.0
Or see this region's nucleotide sequence