Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4311 and Shewana3_4312 are separated by 37 nucleotides Shewana3_4312 and Shewana3_4313 are separated by 3 nucleotides Shewana3_4313 and Shewana3_4314 are separated by 55 nucleotides Shewana3_4314 and Shewana3_4315 are separated by 93 nucleotides Shewana3_4315 and Shewana3_4316 overlap by 4 nucleotides
Shewana3_4311: Shewana3_4311 - putative mercuric reductase (RefSeq), at 200,669 to 202,324
_4311
Shewana3_4312: Shewana3_4312 - putative mercury transport protein MerC (RefSeq), at 202,362 to 202,781
_4312
Shewana3_4313: Shewana3_4313 - mercuric transport protein periplasmic component (RefSeq), at 202,785 to 203,060
_4313
Shewana3_4314: Shewana3_4314 - mercuric transporter MerT (RefSeq), at 203,116 to 203,463
_4314
Shewana3_4315: Shewana3_4315 - MerR family transcriptional regulator (RefSeq), at 203,557 to 203,949
_4315
Shewana3_4316: Shewana3_4316 - phage integrase family protein (RefSeq), at 203,946 to 204,968
_4316
Position (kb) 202
203
204 Strain fitness (log2 ratio) -1
0
1 at 201.815 kb on - strand, within Shewana3_4311 at 201.826 kb on + strand, within Shewana3_4311 at 201.849 kb on + strand, within Shewana3_4311 at 202.114 kb on + strand, within Shewana3_4311 at 202.274 kb on - strand at 202.367 kb on - strand at 202.580 kb on + strand, within Shewana3_4312 at 202.588 kb on - strand, within Shewana3_4312 at 202.825 kb on + strand, within Shewana3_4313 at 202.973 kb on - strand, within Shewana3_4313 at 203.242 kb on + strand, within Shewana3_4314 at 203.250 kb on - strand, within Shewana3_4314 at 203.390 kb on + strand, within Shewana3_4314 at 203.395 kb on + strand, within Shewana3_4314 at 203.398 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.403 kb on - strand, within Shewana3_4314 at 203.944 kb on + strand at 203.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 201,815 - Shewana3_4311 0.69 +0.7 201,826 + Shewana3_4311 0.70 +0.2 201,849 + Shewana3_4311 0.71 -0.4 202,114 + Shewana3_4311 0.87 +0.2 202,274 - +1.4 202,367 - -0.2 202,580 + Shewana3_4312 0.52 -0.4 202,588 - Shewana3_4312 0.54 -0.0 202,825 + Shewana3_4313 0.14 -0.9 202,973 - Shewana3_4313 0.68 -1.4 203,242 + Shewana3_4314 0.36 +0.8 203,250 - Shewana3_4314 0.39 -0.0 203,390 + Shewana3_4314 0.79 -0.3 203,395 + Shewana3_4314 0.80 +0.4 203,398 - Shewana3_4314 0.81 +0.2 203,403 - Shewana3_4314 0.82 +0.2 203,403 - Shewana3_4314 0.82 +0.3 203,944 + +1.3 203,962 - -0.1
Or see this region's nucleotide sequence