Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4275 and Shewana3_4276 are separated by 143 nucleotides Shewana3_4276 and Shewana3_4277 are separated by 120 nucleotides Shewana3_4277 and Shewana3_4278 are separated by 75 nucleotides
Shewana3_4275: Shewana3_4275 - hypothetical protein (RefSeq), at 156,887 to 157,792
_4275
Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808
_4276
Shewana3_4277: Shewana3_4277 - OmpA/MotB domain-containing protein (RefSeq), at 158,929 to 159,672
_4277
Shewana3_4278: Shewana3_4278 - hypothetical protein (RefSeq), at 159,748 to 160,467
_4278
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 157.103 kb on - strand, within Shewana3_4275 at 157.103 kb on - strand, within Shewana3_4275 at 157.120 kb on - strand, within Shewana3_4275 at 157.129 kb on - strand, within Shewana3_4275 at 157.507 kb on - strand, within Shewana3_4275 at 157.515 kb on - strand, within Shewana3_4275 at 157.601 kb on - strand, within Shewana3_4275 at 157.614 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275 at 157.824 kb on - strand at 158.143 kb on - strand, within Shewana3_4276 at 158.426 kb on + strand, within Shewana3_4276 at 158.445 kb on - strand, within Shewana3_4276 at 158.453 kb on - strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.618 kb on - strand, within Shewana3_4276 at 158.620 kb on - strand, within Shewana3_4276 at 158.806 kb on - strand at 159.088 kb on + strand, within Shewana3_4277 at 159.088 kb on + strand, within Shewana3_4277 at 159.096 kb on + strand, within Shewana3_4277 at 159.391 kb on - strand, within Shewana3_4277 at 159.449 kb on + strand, within Shewana3_4277 at 159.526 kb on - strand, within Shewana3_4277 at 159.612 kb on + strand at 159.635 kb on + strand at 159.663 kb on + strand at 159.671 kb on - strand at 159.671 kb on - strand at 159.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 157,103 - Shewana3_4275 0.24 -1.9 157,103 - Shewana3_4275 0.24 -1.6 157,120 - Shewana3_4275 0.26 -0.4 157,129 - Shewana3_4275 0.27 -1.3 157,507 - Shewana3_4275 0.68 -1.3 157,515 - Shewana3_4275 0.69 -0.6 157,601 - Shewana3_4275 0.79 -0.3 157,614 - Shewana3_4275 0.80 -2.1 157,694 - Shewana3_4275 0.89 -1.3 157,694 - Shewana3_4275 0.89 -0.7 157,824 - -0.3 158,143 - Shewana3_4276 0.24 -1.7 158,426 + Shewana3_4276 0.56 -1.1 158,445 - Shewana3_4276 0.58 -0.8 158,453 - Shewana3_4276 0.59 -1.5 158,550 + Shewana3_4276 0.70 +1.5 158,550 + Shewana3_4276 0.70 -0.5 158,550 + Shewana3_4276 0.70 -0.9 158,558 - Shewana3_4276 0.71 -0.1 158,558 - Shewana3_4276 0.71 -2.5 158,558 - Shewana3_4276 0.71 -0.1 158,618 - Shewana3_4276 0.78 +0.2 158,620 - Shewana3_4276 0.78 -2.0 158,806 - -2.5 159,088 + Shewana3_4277 0.21 +0.3 159,088 + Shewana3_4277 0.21 +0.1 159,096 + Shewana3_4277 0.22 -0.2 159,391 - Shewana3_4277 0.62 -0.7 159,449 + Shewana3_4277 0.70 +0.1 159,526 - Shewana3_4277 0.80 -0.3 159,612 + -0.7 159,635 + -0.4 159,663 + +0.0 159,671 - -2.2 159,671 - +0.5 159,765 + +0.3
Or see this region's nucleotide sequence