Strain Fitness in Shewanella loihica PV-4 around Shew_3862

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,593,068	+				+0.0
4,593,073	+				-0.1
4,593,073	+				-0.2
4,593,075	-				-0.3
4,593,081	-				+0.3
4,593,081	-				+0.4
4,593,095	-				-0.1
4,593,347	+				+1.5
4,593,355	-				-0.1
4,593,521	+				-0.1
4,593,529	-				+0.1
4,593,790	-				+0.6
4,593,815	+				-0.0
4,593,815	+				+0.2
4,593,815	+				-0.1
4,593,815	+				-0.6
4,593,815	+				-0.2
4,593,823	-				+0.1
4,593,823	-				+0.7
4,593,823	-				-0.6
4,594,014	-		Shew_3862	0.19	+0.5
4,594,048	+		Shew_3862	0.25	+0.0
4,594,048	+		Shew_3862	0.25	-0.8
4,594,068	+		Shew_3862	0.29	-0.4
4,594,229	+		Shew_3862	0.56	+0.2
4,594,366	-		Shew_3862	0.80	-1.2
4,594,370	+		Shew_3862	0.80	-0.2
4,594,378	-		Shew_3862	0.82	-1.6
4,594,381	+		Shew_3862	0.82	-0.1
4,594,417	-		Shew_3862	0.88	-1.1
4,594,487	+				-0.4
4,594,488	+				-0.3
4,594,488	+				-0.6
4,594,496	+				+1.4
4,594,506	+				-2.1
4,594,528	-				-0.1
4,594,539	+				+1.5
4,594,544	+				-0.2
4,594,544	+				-0.3
4,594,544	+				-0.5
4,594,552	-				+1.5
4,594,633	-				-0.5
4,594,759	-		Shew_3863	0.20	-3.6
4,594,764	-		Shew_3863	0.20	-1.3
4,594,816	-		Shew_3863	0.26	+1.5
4,594,830	-		Shew_3863	0.27	-1.2
4,594,885	-		Shew_3863	0.33	-0.8
4,594,890	-		Shew_3863	0.33	-0.8
4,594,909	-		Shew_3863	0.35	-0.5
4,595,171	-		Shew_3863	0.61	-1.7
4,595,268	-		Shew_3863	0.71	-1.7
4,595,283	-		Shew_3863	0.73	-2.4
4,595,401	-		Shew_3863	0.85	+0.3
4,595,401	-		Shew_3863	0.85	-1.2
4,595,417	-		Shew_3863	0.86	-1.4
4,595,426	-		Shew_3863	0.87	+1.0
4,595,426	-		Shew_3863	0.87	-0.5
4,595,426	-		Shew_3863	0.87	-1.9
4,595,426	-		Shew_3863	0.87	-1.5
4,595,426	-		Shew_3863	0.87	-2.2
4,595,426	-		Shew_3863	0.87	+0.8
4,595,436	-		Shew_3863	0.88	-0.1
4,595,436	-		Shew_3863	0.88	+0.1
4,595,436	-		Shew_3863	0.88	-0.8
4,595,436	-		Shew_3863	0.88	-0.3
4,595,436	-		Shew_3863	0.88	-1.6
4,595,436	-		Shew_3863	0.88	-1.8