Strain Fitness in Shewanella loihica PV-4 around Shew_2422

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2421 and Shew_2422 are separated by 150 nucleotidesShew_2422 and Shew_2423 are separated by 18 nucleotidesShew_2423 and Shew_2424 are separated by 293 nucleotidesShew_2424 and fadJ are separated by 158 nucleotides Shew_2421: Shew_2421 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 2,843,433 to 2,847,746 _2421 Shew_2422: Shew_2422 - hypothetical protein (RefSeq), at 2,847,897 to 2,848,532 _2422 Shew_2423: Shew_2423 - hypothetical protein (RefSeq), at 2,848,551 to 2,848,670 _2423 Shew_2424: Shew_2424 - hypothetical protein (RefSeq), at 2,848,964 to 2,849,170 _2424 Shew_2425: fadJ - multifunctional fatty acid oxidation complex subunit alpha (RefSeq), at 2,849,329 to 2,851,449 fadJ Position (kb) 2847 2848 2849Strain fitness (log2 ratio) -1 0 1at 2846.981 kb on - strand, within Shew_2421at 2846.981 kb on - strand, within Shew_2421at 2846.997 kb on + strand, within Shew_2421at 2847.100 kb on + strand, within Shew_2421at 2847.408 kb on - strandat 2847.408 kb on + strandat 2847.527 kb on - strandat 2848.360 kb on - strand, within Shew_2422at 2848.621 kb on - strand, within Shew_2423at 2848.819 kb on - strandat 2848.855 kb on + strandat 2848.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,846,981 - Shew_2421 0.82 -0.3
2,846,981 - Shew_2421 0.82 -0.0
2,846,997 + Shew_2421 0.83 +0.2
2,847,100 + Shew_2421 0.85 -0.2
2,847,408 - -0.5
2,847,408 + +0.7
2,847,527 - -0.3
2,848,360 - Shew_2422 0.73 +0.6
2,848,621 - Shew_2423 0.58 +0.1
2,848,819 - +0.1
2,848,855 + -0.3
2,848,954 - +0.2

Or see this region's nucleotide sequence