Strain Fitness in Shewanella loihica PV-4 around Shew_1994

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1992 and Shew_1993 are separated by 55 nucleotidesShew_1993 and Shew_1994 are separated by 94 nucleotidesShew_1994 and Shew_1995 are separated by 84 nucleotides Shew_1992: Shew_1992 - hypothetical protein (RefSeq), at 2,304,158 to 2,304,850 _1992 Shew_1993: Shew_1993 - fumarate/nitrate reduction transcriptional regulator (RefSeq), at 2,304,906 to 2,305,655 _1993 Shew_1994: Shew_1994 - universal stress protein UspE (RefSeq), at 2,305,750 to 2,306,682 _1994 Shew_1995: Shew_1995 - PP-loop domain-containing protein (RefSeq), at 2,306,767 to 2,307,720 _1995 Position (kb) 2305 2306 2307Strain fitness (log2 ratio) -1 0 1at 2304.944 kb on - strandat 2305.645 kb on - strandat 2305.950 kb on + strand, within Shew_1994at 2305.958 kb on - strand, within Shew_1994at 2307.047 kb on + strand, within Shew_1995at 2307.278 kb on + strand, within Shew_1995at 2307.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,304,944 - -1.1
2,305,645 - -1.1
2,305,950 + Shew_1994 0.21 +0.3
2,305,958 - Shew_1994 0.22 +0.9
2,307,047 + Shew_1995 0.29 -0.8
2,307,278 + Shew_1995 0.54 +0.8
2,307,631 - -0.1

Or see this region's nucleotide sequence