Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1790 and Shew_1791 are separated by 2 nucleotides Shew_1791 and Shew_1792 are separated by 219 nucleotides Shew_1792 and Shew_1793 are separated by 39 nucleotides
Shew_1790: Shew_1790 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,048,197 to 2,050,368
_1790
Shew_1791: Shew_1791 - two component transcriptional regulator (RefSeq), at 2,050,371 to 2,051,063
_1791
Shew_1792: Shew_1792 - OmpA/MotB domain-containing protein (RefSeq), at 2,051,283 to 2,052,038
_1792
Shew_1793: Shew_1793 - vault protein inter-alpha-trypsin subunit (RefSeq), at 2,052,078 to 2,054,408
_1793
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-1
0
1 at 2050.304 kb on + strand at 2050.750 kb on + strand, within Shew_1791 at 2050.871 kb on + strand, within Shew_1791 at 2050.871 kb on + strand, within Shew_1791 at 2050.879 kb on - strand, within Shew_1791 at 2050.879 kb on - strand, within Shew_1791 at 2050.957 kb on - strand, within Shew_1791 at 2051.211 kb on + strand at 2051.430 kb on + strand, within Shew_1792 at 2051.932 kb on - strand, within Shew_1792 at 2052.020 kb on - strand at 2052.055 kb on - strand at 2052.055 kb on - strand at 2052.328 kb on - strand, within Shew_1793 at 2052.513 kb on + strand, within Shew_1793 at 2052.569 kb on + strand, within Shew_1793 at 2052.577 kb on - strand, within Shew_1793 at 2052.600 kb on - strand, within Shew_1793 at 2052.602 kb on + strand, within Shew_1793 at 2052.745 kb on + strand, within Shew_1793 at 2052.849 kb on - strand, within Shew_1793
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,050,304 + -0.1 2,050,750 + Shew_1791 0.55 -0.1 2,050,871 + Shew_1791 0.72 +0.1 2,050,871 + Shew_1791 0.72 +0.2 2,050,879 - Shew_1791 0.73 -0.1 2,050,879 - Shew_1791 0.73 +0.5 2,050,957 - Shew_1791 0.85 +0.5 2,051,211 + -0.3 2,051,430 + Shew_1792 0.19 +1.3 2,051,932 - Shew_1792 0.86 +0.2 2,052,020 - +1.2 2,052,055 - +0.5 2,052,055 - +0.7 2,052,328 - Shew_1793 0.11 -0.2 2,052,513 + Shew_1793 0.19 -0.9 2,052,569 + Shew_1793 0.21 -0.3 2,052,577 - Shew_1793 0.21 +0.3 2,052,600 - Shew_1793 0.22 +0.5 2,052,602 + Shew_1793 0.22 -0.2 2,052,745 + Shew_1793 0.29 -0.6 2,052,849 - Shew_1793 0.33 +0.4
Or see this region's nucleotide sequence