Strain Fitness in Shewanella loihica PV-4 around Shew_1792

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1790 and Shew_1791 are separated by 2 nucleotidesShew_1791 and Shew_1792 are separated by 219 nucleotidesShew_1792 and Shew_1793 are separated by 39 nucleotides Shew_1790: Shew_1790 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,048,197 to 2,050,368 _1790 Shew_1791: Shew_1791 - two component transcriptional regulator (RefSeq), at 2,050,371 to 2,051,063 _1791 Shew_1792: Shew_1792 - OmpA/MotB domain-containing protein (RefSeq), at 2,051,283 to 2,052,038 _1792 Shew_1793: Shew_1793 - vault protein inter-alpha-trypsin subunit (RefSeq), at 2,052,078 to 2,054,408 _1793 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -1 0 1at 2050.304 kb on + strandat 2050.750 kb on + strand, within Shew_1791at 2050.871 kb on + strand, within Shew_1791at 2050.871 kb on + strand, within Shew_1791at 2050.879 kb on - strand, within Shew_1791at 2050.879 kb on - strand, within Shew_1791at 2050.957 kb on - strand, within Shew_1791at 2051.211 kb on + strandat 2051.430 kb on + strand, within Shew_1792at 2051.932 kb on - strand, within Shew_1792at 2052.020 kb on - strandat 2052.055 kb on - strandat 2052.055 kb on - strandat 2052.328 kb on - strand, within Shew_1793at 2052.513 kb on + strand, within Shew_1793at 2052.569 kb on + strand, within Shew_1793at 2052.577 kb on - strand, within Shew_1793at 2052.600 kb on - strand, within Shew_1793at 2052.602 kb on + strand, within Shew_1793at 2052.745 kb on + strand, within Shew_1793at 2052.849 kb on - strand, within Shew_1793

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,050,304 + -0.1
2,050,750 + Shew_1791 0.55 -0.1
2,050,871 + Shew_1791 0.72 +0.1
2,050,871 + Shew_1791 0.72 +0.2
2,050,879 - Shew_1791 0.73 -0.1
2,050,879 - Shew_1791 0.73 +0.5
2,050,957 - Shew_1791 0.85 +0.5
2,051,211 + -0.3
2,051,430 + Shew_1792 0.19 +1.3
2,051,932 - Shew_1792 0.86 +0.2
2,052,020 - +1.2
2,052,055 - +0.5
2,052,055 - +0.7
2,052,328 - Shew_1793 0.11 -0.2
2,052,513 + Shew_1793 0.19 -0.9
2,052,569 + Shew_1793 0.21 -0.3
2,052,577 - Shew_1793 0.21 +0.3
2,052,600 - Shew_1793 0.22 +0.5
2,052,602 + Shew_1793 0.22 -0.2
2,052,745 + Shew_1793 0.29 -0.6
2,052,849 - Shew_1793 0.33 +0.4

Or see this region's nucleotide sequence