Strain Fitness in Shewanella loihica PV-4 around Shew_1584

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyebU and Shew_1584 are separated by 88 nucleotidesShew_1584 and Shew_1585 are separated by 115 nucleotides Shew_1583: yebU - rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq), at 1,812,330 to 1,813,790 yebU Shew_1584: Shew_1584 - nucleoside recognition domain-containing protein (RefSeq), at 1,813,879 to 1,815,105 _1584 Shew_1585: Shew_1585 - hypothetical protein (RefSeq), at 1,815,221 to 1,816,120 _1585 Position (kb) 1813 1814 1815 1816Strain fitness (log2 ratio) -1 0 1at 1813.303 kb on + strand, within yebUat 1813.992 kb on - strandat 1814.053 kb on + strand, within Shew_1584at 1814.327 kb on + strand, within Shew_1584at 1814.335 kb on - strand, within Shew_1584at 1814.960 kb on + strand, within Shew_1584at 1815.290 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,813,303 + yebU Shew_1583 0.67 +0.4
1,813,992 - +0.1
1,814,053 + Shew_1584 0.14 +0.5
1,814,327 + Shew_1584 0.37 +0.7
1,814,335 - Shew_1584 0.37 +0.5
1,814,960 + Shew_1584 0.88 +0.7
1,815,290 + -0.6

Or see this region's nucleotide sequence