Strain Fitness in Shewanella loihica PV-4 around Shew_1557

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1555 and Shew_1556 are separated by 256 nucleotidesShew_1556 and Shew_1557 are separated by 187 nucleotidesShew_1557 and Shew_1558 are separated by 183 nucleotides Shew_1555: Shew_1555 - Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq), at 1,785,277 to 1,786,308 _1555 Shew_1556: Shew_1556 - hypothetical protein (RefSeq), at 1,786,565 to 1,787,014 _1556 Shew_1557: Shew_1557 - cupin 4 family protein (RefSeq), at 1,787,202 to 1,788,362 _1557 Shew_1558: Shew_1558 - adenylosuccinate lyase (RefSeq), at 1,788,546 to 1,789,916 _1558 Position (kb) 1787 1788 1789Strain fitness (log2 ratio) -1 0 1at 1787.287 kb on - strandat 1787.546 kb on + strand, within Shew_1557at 1787.647 kb on - strand, within Shew_1557at 1787.758 kb on + strand, within Shew_1557at 1787.758 kb on + strand, within Shew_1557at 1788.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,787,287 - -0.9
1,787,546 + Shew_1557 0.30 +0.0
1,787,647 - Shew_1557 0.38 -0.6
1,787,758 + Shew_1557 0.48 -0.9
1,787,758 + Shew_1557 0.48 -0.8
1,788,287 + -0.5

Or see this region's nucleotide sequence