Strain Fitness in Shewanella loihica PV-4 around Shew_1266

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1264 and Shew_1265 are separated by 72 nucleotidesShew_1265 and Shew_1266 are separated by 4 nucleotidesShew_1266 and Shew_1267 are separated by 538 nucleotides Shew_1264: Shew_1264 - UvrD/REP helicase (RefSeq), at 1,461,981 to 1,464,017 _1264 Shew_1265: Shew_1265 - hypothetical protein (RefSeq), at 1,464,090 to 1,464,632 _1265 Shew_1266: Shew_1266 - XRE family transcriptional regulator (RefSeq), at 1,464,637 to 1,465,020 _1266 Shew_1267: Shew_1267 - phage integrase family protein (RefSeq), at 1,465,559 to 1,466,788 _1267 Position (kb) 1464 1465 1466Strain fitness (log2 ratio) -1 0 1at 1464.012 kb on - strandat 1464.307 kb on - strand, within Shew_1265at 1464.825 kb on + strand, within Shew_1266at 1465.755 kb on + strand, within Shew_1267at 1465.763 kb on - strand, within Shew_1267at 1465.989 kb on - strand, within Shew_1267

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,464,012 - -0.2
1,464,307 - Shew_1265 0.40 -0.3
1,464,825 + Shew_1266 0.49 -1.2
1,465,755 + Shew_1267 0.16 +0.2
1,465,763 - Shew_1267 0.17 +0.4
1,465,989 - Shew_1267 0.35 +0.2

Or see this region's nucleotide sequence