Strain Fitness in Shewanella loihica PV-4 around Shew_1203

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1202 and mazG are separated by 102 nucleotidesmazG and Shew_1204 are separated by 110 nucleotides Shew_1202: Shew_1202 - (p)ppGpp synthetase I, SpoT/RelA (RefSeq), at 1,395,358 to 1,397,562 _1202 Shew_1203: mazG - nucleoside triphosphate pyrophosphohydrolase (RefSeq), at 1,397,665 to 1,398,462 mazG Shew_1204: Shew_1204 - CTP synthetase (RefSeq), at 1,398,573 to 1,400,210 _1204 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -1 0 1at 1397.233 kb on + strand, within Shew_1202at 1397.256 kb on + strand, within Shew_1202at 1397.381 kb on - strandat 1397.678 kb on - strandat 1397.692 kb on + strandat 1397.802 kb on + strand, within mazGat 1397.934 kb on + strand, within mazGat 1398.094 kb on + strand, within mazGat 1398.149 kb on + strand, within mazG

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,397,233 + Shew_1202 0.85 +1.5
1,397,256 + Shew_1202 0.86 +1.4
1,397,381 - +1.2
1,397,678 - -0.1
1,397,692 + +0.2
1,397,802 + mazG Shew_1203 0.17 +0.2
1,397,934 + mazG Shew_1203 0.34 +0.6
1,398,094 + mazG Shew_1203 0.54 +0.3
1,398,149 + mazG Shew_1203 0.61 +0.9

Or see this region's nucleotide sequence