Strain Fitness in Shewanella loihica PV-4 around Shew_1186

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglyA and Shew_1186 are separated by 124 nucleotidesShew_1186 and Shew_1187 are separated by 38 nucleotides Shew_1185: glyA - serine hydroxymethyltransferase (RefSeq), at 1,377,630 to 1,378,883 glyA Shew_1186: Shew_1186 - transcriptional regulator NrdR (RefSeq), at 1,379,008 to 1,379,481 _1186 Shew_1187: Shew_1187 - riboflavin biosynthesis protein RibD (RefSeq), at 1,379,520 to 1,380,680 _1187 Position (kb) 1379 1380Strain fitness (log2 ratio) -1 0 1at 1378.126 kb on + strand, within glyAat 1378.325 kb on - strand, within glyAat 1378.669 kb on + strand, within glyAat 1379.140 kb on + strand, within Shew_1186

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,378,126 + glyA Shew_1185 0.40 +0.3
1,378,325 - glyA Shew_1185 0.55 -0.1
1,378,669 + glyA Shew_1185 0.83 +1.6
1,379,140 + Shew_1186 0.28 +0.6

Or see this region's nucleotide sequence