Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0840 and Shew_0841 are separated by 192 nucleotides Shew_0841 and Shew_0842 are separated by 91 nucleotides Shew_0842 and Shew_0843 are separated by 61 nucleotides
Shew_0840: Shew_0840 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 963,046 to 963,813
_0840
Shew_0841: Shew_0841 - hypothetical protein (RefSeq), at 964,006 to 964,380
_0841
Shew_0842: Shew_0842 - two component LuxR family transcriptional regulator (RefSeq), at 964,472 to 965,101
_0842
Shew_0843: Shew_0843 - nitrate/nitrite sensor protein NarQ (RefSeq), at 965,163 to 966,866
_0843
Position (kb) 964
965
966 Strain fitness (log2 ratio) -1
0
1
2 at 963.693 kb on + strand, within Shew_0840 at 964.169 kb on - strand, within Shew_0841 at 964.210 kb on - strand, within Shew_0841 at 964.252 kb on - strand, within Shew_0841 at 964.278 kb on + strand, within Shew_0841 at 964.477 kb on + strand at 964.485 kb on - strand at 964.547 kb on + strand, within Shew_0842 at 964.725 kb on + strand, within Shew_0842 at 964.919 kb on - strand, within Shew_0842 at 965.227 kb on - strand at 965.587 kb on + strand, within Shew_0843 at 965.606 kb on + strand, within Shew_0843 at 965.620 kb on + strand, within Shew_0843 at 965.745 kb on + strand, within Shew_0843 at 965.753 kb on + strand, within Shew_0843 at 965.894 kb on + strand, within Shew_0843
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 963,693 + Shew_0840 0.84 -0.7 964,169 - Shew_0841 0.43 +0.1 964,210 - Shew_0841 0.54 +0.2 964,252 - Shew_0841 0.66 -0.4 964,278 + Shew_0841 0.73 -0.2 964,477 + -0.1 964,485 - -0.5 964,547 + Shew_0842 0.12 +0.1 964,725 + Shew_0842 0.40 +2.1 964,919 - Shew_0842 0.71 -0.6 965,227 - +0.4 965,587 + Shew_0843 0.25 +0.3 965,606 + Shew_0843 0.26 +0.3 965,620 + Shew_0843 0.27 +0.1 965,745 + Shew_0843 0.34 +0.0 965,753 + Shew_0843 0.35 +0.4 965,894 + Shew_0843 0.43 +0.2
Or see this region's nucleotide sequence