Strain Fitness in Shewanella loihica PV-4 around Shew_0833

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0832 and Shew_0833 are separated by 262 nucleotidesShew_0833 and Shew_0834 are separated by 82 nucleotidesShew_0834 and Shew_0835 are separated by 145 nucleotides Shew_0832: Shew_0832 - alkaline phosphatase (RefSeq), at 953,647 to 955,419 _0832 Shew_0833: Shew_0833 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 955,682 to 956,248 _0833 Shew_0834: Shew_0834 - hypothetical protein (RefSeq), at 956,331 to 956,543 _0834 Shew_0835: Shew_0835 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 956,689 to 959,337 _0835 Position (kb) 955 956 957Strain fitness (log2 ratio) -2 -1 0 1at 955.287 kb on - strandat 955.292 kb on + strandat 955.312 kb on + strandat 955.378 kb on + strandat 955.797 kb on + strand, within Shew_0833at 956.214 kb on - strandat 956.293 kb on - strandat 956.329 kb on + strandat 956.455 kb on + strand, within Shew_0834at 956.845 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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955,287 - +0.1
955,292 + -0.2
955,312 + -2.7
955,378 + +0.0
955,797 + Shew_0833 0.20 +1.3
956,214 - +0.0
956,293 - +0.1
956,329 + +0.0
956,455 + Shew_0834 0.58 +0.4
956,845 - +0.2

Or see this region's nucleotide sequence