Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0389 and Shew_0390 are separated by 4 nucleotides Shew_0390 and Shew_0391 overlap by 4 nucleotides
Shew_0389: Shew_0389 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 438,699 to 440,390
_0389
Shew_0390: Shew_0390 - MSHA biogenesis protein MshM (RefSeq), at 440,395 to 441,300
_0390
Shew_0391: Shew_0391 - TPR repeat-containing protein (RefSeq), at 441,297 to 442,457
_0391
Position (kb) 440
441
442 Strain fitness (log2 ratio) -1
0
1 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.402 kb on - strand, within Shew_0389 at 439.406 kb on + strand, within Shew_0389 at 439.520 kb on + strand, within Shew_0389 at 439.528 kb on - strand, within Shew_0389 at 439.643 kb on + strand, within Shew_0389 at 439.753 kb on - strand, within Shew_0389 at 439.766 kb on - strand, within Shew_0389 at 439.816 kb on + strand, within Shew_0389 at 439.853 kb on + strand, within Shew_0389 at 440.000 kb on + strand, within Shew_0389 at 440.075 kb on - strand, within Shew_0389 at 440.280 kb on - strand at 440.342 kb on + strand at 440.846 kb on - strand, within Shew_0390 at 441.247 kb on + strand at 441.413 kb on - strand, within Shew_0391 at 441.463 kb on - strand, within Shew_0391 at 441.751 kb on - strand, within Shew_0391 at 441.763 kb on - strand, within Shew_0391 at 441.768 kb on + strand, within Shew_0391 at 441.773 kb on + strand, within Shew_0391 at 441.832 kb on - strand, within Shew_0391 at 441.941 kb on + strand, within Shew_0391 at 442.038 kb on - strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.049 kb on + strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391 at 442.057 kb on - strand, within Shew_0391
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 439,402 - Shew_0389 0.42 +0.2 439,402 - Shew_0389 0.42 +0.6 439,402 - Shew_0389 0.42 -1.4 439,406 + Shew_0389 0.42 -0.2 439,520 + Shew_0389 0.49 +0.2 439,528 - Shew_0389 0.49 +0.1 439,643 + Shew_0389 0.56 -0.0 439,753 - Shew_0389 0.62 -0.2 439,766 - Shew_0389 0.63 +0.1 439,816 + Shew_0389 0.66 -1.6 439,853 + Shew_0389 0.68 -1.3 440,000 + Shew_0389 0.77 +0.2 440,075 - Shew_0389 0.81 -0.8 440,280 - -0.2 440,342 + +0.3 440,846 - Shew_0390 0.50 -0.6 441,247 + +0.3 441,413 - Shew_0391 0.10 +0.2 441,463 - Shew_0391 0.14 -0.6 441,751 - Shew_0391 0.39 +0.1 441,763 - Shew_0391 0.40 -0.1 441,768 + Shew_0391 0.41 +0.2 441,773 + Shew_0391 0.41 +0.4 441,832 - Shew_0391 0.46 +0.1 441,941 + Shew_0391 0.55 +0.4 442,038 - Shew_0391 0.64 +0.3 442,049 + Shew_0391 0.65 +0.9 442,049 + Shew_0391 0.65 +0.1 442,057 - Shew_0391 0.65 -0.6 442,057 - Shew_0391 0.65 -1.1 442,057 - Shew_0391 0.65 +0.2 442,057 - Shew_0391 0.65 +0.8 442,057 - Shew_0391 0.65 +0.4 442,057 - Shew_0391 0.65 -0.0 442,057 - Shew_0391 0.65 +0.2 442,057 - Shew_0391 0.65 -0.0
Or see this region's nucleotide sequence