Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0350 and Shew_0351 are separated by 28 nucleotides Shew_0351 and Shew_0352 are separated by 117 nucleotides Shew_0352 and Shew_0353 are separated by 2 nucleotides
Shew_0350: Shew_0350 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 399,422 to 400,225
_0350
Shew_0351: Shew_0351 - TPR repeat-containing protein (RefSeq), at 400,254 to 400,946
_0351
Shew_0352: Shew_0352 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 401,064 to 401,711
_0352
Shew_0353: Shew_0353 - polysulphide reductase, NrfD (RefSeq), at 401,714 to 402,661
_0353
Position (kb) 401
402 Strain fitness (log2 ratio) -1
0
1 at 400.107 kb on - strand, within Shew_0350 at 400.146 kb on - strand at 400.284 kb on + strand at 400.381 kb on + strand, within Shew_0351 at 400.545 kb on + strand, within Shew_0351 at 400.553 kb on - strand, within Shew_0351 at 400.553 kb on - strand, within Shew_0351 at 400.553 kb on - strand, within Shew_0351 at 400.564 kb on + strand, within Shew_0351 at 400.564 kb on + strand, within Shew_0351 at 400.572 kb on - strand, within Shew_0351 at 400.574 kb on + strand, within Shew_0351 at 400.855 kb on - strand, within Shew_0351 at 400.900 kb on + strand at 400.903 kb on - strand at 400.905 kb on + strand at 400.941 kb on + strand at 401.073 kb on + strand at 401.133 kb on - strand, within Shew_0352 at 401.237 kb on - strand, within Shew_0352 at 401.538 kb on - strand, within Shew_0352 at 401.550 kb on + strand, within Shew_0352 at 401.653 kb on - strand at 401.686 kb on - strand at 401.880 kb on - strand, within Shew_0353 at 401.943 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.129 kb on - strand, within Shew_0353 at 402.632 kb on - strand at 402.641 kb on + strand at 402.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 400,107 - Shew_0350 0.85 +0.1 400,146 - +0.0 400,284 + -0.2 400,381 + Shew_0351 0.18 -0.4 400,545 + Shew_0351 0.42 +0.1 400,553 - Shew_0351 0.43 +0.5 400,553 - Shew_0351 0.43 -0.1 400,553 - Shew_0351 0.43 -0.2 400,564 + Shew_0351 0.45 +0.4 400,564 + Shew_0351 0.45 +0.3 400,572 - Shew_0351 0.46 +0.1 400,574 + Shew_0351 0.46 -1.0 400,855 - Shew_0351 0.87 +0.1 400,900 + +0.1 400,903 - +1.0 400,905 + -0.6 400,941 + +1.5 401,073 + +1.2 401,133 - Shew_0352 0.11 +0.2 401,237 - Shew_0352 0.27 -0.2 401,538 - Shew_0352 0.73 +0.8 401,550 + Shew_0352 0.75 +1.4 401,653 - +0.2 401,686 - +0.6 401,880 - Shew_0353 0.18 +0.1 401,943 - Shew_0353 0.24 -0.7 402,129 - Shew_0353 0.44 +0.3 402,129 - Shew_0353 0.44 -0.6 402,632 - +0.3 402,641 + -0.1 402,702 + +0.0
Or see this region's nucleotide sequence