Strain Fitness in Shewanella loihica PV-4 around Shew_0342

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0341 and Shew_0342 are separated by 50 nucleotidesShew_0342 and Shew_0343 are separated by 229 nucleotides Shew_0341: Shew_0341 - TonB-dependent receptor (RefSeq), at 387,111 to 389,840 _0341 Shew_0342: Shew_0342 - hypothetical protein (RefSeq), at 389,891 to 390,427 _0342 Shew_0343: Shew_0343 - hypothetical protein (RefSeq), at 390,657 to 391,235 _0343 Position (kb) 389 390 391Strain fitness (log2 ratio) -1 0 1at 388.925 kb on - strand, within Shew_0341at 389.107 kb on + strand, within Shew_0341at 389.158 kb on - strand, within Shew_0341at 389.338 kb on - strand, within Shew_0341at 389.350 kb on + strand, within Shew_0341at 389.595 kb on + strandat 389.630 kb on - strandat 389.697 kb on - strandat 389.815 kb on - strandat 390.008 kb on - strand, within Shew_0342at 390.049 kb on + strand, within Shew_0342at 390.088 kb on + strand, within Shew_0342at 390.294 kb on - strand, within Shew_0342at 390.307 kb on + strand, within Shew_0342at 390.388 kb on + strandat 390.396 kb on - strandat 390.564 kb on - strandat 390.634 kb on - strandat 390.711 kb on - strandat 391.047 kb on - strand, within Shew_0343at 391.066 kb on + strand, within Shew_0343

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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388,925 - Shew_0341 0.66 -0.1
389,107 + Shew_0341 0.73 +0.2
389,158 - Shew_0341 0.75 -0.3
389,338 - Shew_0341 0.82 +0.2
389,350 + Shew_0341 0.82 +0.2
389,595 + +0.2
389,630 - +0.0
389,697 - +0.3
389,815 - +0.2
390,008 - Shew_0342 0.22 +0.1
390,049 + Shew_0342 0.29 +0.8
390,088 + Shew_0342 0.37 +0.8
390,294 - Shew_0342 0.75 +0.2
390,307 + Shew_0342 0.77 +0.8
390,388 + +0.5
390,396 - +0.2
390,564 - -0.0
390,634 - +0.1
390,711 - +0.1
391,047 - Shew_0343 0.67 +0.3
391,066 + Shew_0343 0.71 +0.2

Or see this region's nucleotide sequence