Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0256 and Shew_0257 are separated by 135 nucleotides Shew_0257 and Shew_0258 are separated by 101 nucleotides
Shew_0256: Shew_0256 - hypothetical protein (RefSeq), at 274,860 to 275,438
_0256
Shew_0257: Shew_0257 - peptidase S9 prolyl oligopeptidase (RefSeq), at 275,574 to 277,652
_0257
Shew_0258: Shew_0258 - hypothetical protein (RefSeq), at 277,754 to 278,701
_0258
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -1
0
1 at 274.593 kb on + strand at 274.608 kb on - strand at 274.629 kb on - strand at 274.650 kb on - strand at 274.650 kb on - strand at 274.655 kb on + strand at 274.745 kb on - strand at 274.746 kb on + strand at 275.142 kb on - strand, within Shew_0256 at 275.142 kb on - strand, within Shew_0256 at 275.617 kb on + strand at 275.646 kb on - strand at 275.672 kb on - strand at 275.683 kb on + strand at 275.719 kb on - strand at 275.850 kb on - strand, within Shew_0257 at 275.902 kb on - strand, within Shew_0257 at 276.164 kb on + strand, within Shew_0257 at 276.365 kb on + strand, within Shew_0257 at 276.373 kb on - strand, within Shew_0257 at 276.462 kb on - strand, within Shew_0257 at 276.525 kb on + strand, within Shew_0257 at 276.532 kb on - strand, within Shew_0257 at 276.532 kb on - strand, within Shew_0257 at 276.568 kb on - strand, within Shew_0257 at 276.705 kb on - strand, within Shew_0257 at 276.901 kb on + strand, within Shew_0257 at 276.909 kb on - strand, within Shew_0257 at 276.909 kb on - strand, within Shew_0257 at 277.028 kb on + strand, within Shew_0257 at 277.028 kb on + strand, within Shew_0257 at 277.028 kb on + strand, within Shew_0257 at 277.078 kb on + strand, within Shew_0257 at 277.254 kb on + strand, within Shew_0257 at 277.264 kb on + strand, within Shew_0257 at 277.272 kb on + strand, within Shew_0257 at 277.356 kb on + strand, within Shew_0257 at 277.506 kb on + strand at 277.598 kb on - strand at 277.894 kb on + strand, within Shew_0258 at 278.082 kb on - strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.084 kb on + strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.092 kb on - strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.187 kb on + strand, within Shew_0258 at 278.195 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.453 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 274,593 + -0.2 274,608 - -0.1 274,629 - +0.5 274,650 - +0.2 274,650 - -0.2 274,655 + +0.2 274,745 - -0.5 274,746 + +0.1 275,142 - Shew_0256 0.49 +0.7 275,142 - Shew_0256 0.49 +0.2 275,617 + +0.1 275,646 - -1.0 275,672 - +0.2 275,683 + -0.1 275,719 - -0.3 275,850 - Shew_0257 0.13 +0.0 275,902 - Shew_0257 0.16 +0.6 276,164 + Shew_0257 0.28 +0.4 276,365 + Shew_0257 0.38 -0.3 276,373 - Shew_0257 0.38 +0.2 276,462 - Shew_0257 0.43 +1.4 276,525 + Shew_0257 0.46 -0.3 276,532 - Shew_0257 0.46 +1.4 276,532 - Shew_0257 0.46 +0.2 276,568 - Shew_0257 0.48 +1.1 276,705 - Shew_0257 0.54 +0.8 276,901 + Shew_0257 0.64 +0.1 276,909 - Shew_0257 0.64 -0.3 276,909 - Shew_0257 0.64 +0.3 277,028 + Shew_0257 0.70 -0.0 277,028 + Shew_0257 0.70 +1.1 277,028 + Shew_0257 0.70 +0.2 277,078 + Shew_0257 0.72 +0.1 277,254 + Shew_0257 0.81 +0.1 277,264 + Shew_0257 0.81 +0.6 277,272 + Shew_0257 0.82 -0.2 277,356 + Shew_0257 0.86 +0.1 277,506 + +0.2 277,598 - +0.1 277,894 + Shew_0258 0.15 +0.0 278,082 - Shew_0258 0.35 -0.4 278,084 + Shew_0258 0.35 +0.5 278,084 + Shew_0258 0.35 -0.2 278,092 - Shew_0258 0.36 +0.4 278,092 - Shew_0258 0.36 -0.4 278,187 + Shew_0258 0.46 +0.1 278,187 + Shew_0258 0.46 +0.5 278,195 - Shew_0258 0.47 -0.1 278,453 - Shew_0258 0.74 +0.3 278,453 - Shew_0258 0.74 -0.0 278,562 - Shew_0258 0.85 +0.9 278,562 - Shew_0258 0.85 +0.4 278,613 + +0.1
Or see this region's nucleotide sequence