Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0022 and Shew_0023 overlap by 1 nucleotides Shew_0023 and Shew_0024 are separated by 21 nucleotides Shew_0024 and Shew_0025 are separated by 272 nucleotides Shew_0025 and Shew_0026 are separated by 115 nucleotides
Shew_0022: Shew_0022 - TrkH family potassium uptake protein (RefSeq), at 25,599 to 27,056
_0022
Shew_0023: Shew_0023 - protoporphyrinogen oxidase (RefSeq), at 27,056 to 27,583
_0023
Shew_0024: Shew_0024 - ArsR family transcriptional regulator (RefSeq), at 27,605 to 27,910
_0024
Shew_0025: Shew_0025 - protoporphyrinogen oxidase (RefSeq), at 28,183 to 28,716
_0025
Shew_0026: Shew_0026 - hypothetical protein (RefSeq), at 28,832 to 29,368
_0026
Position (kb) 27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 27.032 kb on - strand at 27.097 kb on + strand at 27.165 kb on + strand, within Shew_0023 at 27.173 kb on - strand, within Shew_0023 at 27.173 kb on - strand, within Shew_0023 at 27.208 kb on + strand, within Shew_0023 at 27.420 kb on - strand, within Shew_0023 at 27.540 kb on + strand at 27.556 kb on - strand at 27.567 kb on + strand at 27.594 kb on - strand at 27.671 kb on + strand, within Shew_0024 at 27.851 kb on - strand, within Shew_0024 at 28.301 kb on + strand, within Shew_0025 at 28.365 kb on - strand, within Shew_0025 at 28.401 kb on + strand, within Shew_0025 at 28.401 kb on + strand, within Shew_0025 at 28.401 kb on + strand, within Shew_0025 at 28.442 kb on + strand, within Shew_0025 at 28.700 kb on - strand at 28.750 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 27,032 - +0.8 27,097 + -0.1 27,165 + Shew_0023 0.21 +0.6 27,173 - Shew_0023 0.22 -0.1 27,173 - Shew_0023 0.22 +0.4 27,208 + Shew_0023 0.29 +0.1 27,420 - Shew_0023 0.69 +0.7 27,540 + -0.6 27,556 - -0.0 27,567 + +0.9 27,594 - +0.3 27,671 + Shew_0024 0.22 +1.1 27,851 - Shew_0024 0.80 +1.3 28,301 + Shew_0025 0.22 -0.1 28,365 - Shew_0025 0.34 -0.7 28,401 + Shew_0025 0.41 -0.2 28,401 + Shew_0025 0.41 -1.8 28,401 + Shew_0025 0.41 +0.0 28,442 + Shew_0025 0.49 -0.2 28,700 - -0.1 28,750 + +0.1
Or see this region's nucleotide sequence