Strain Fitness in Shewanella loihica PV-4 around Shew_R0032

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1267 and ssrA are separated by 201 nucleotidesssrA and smpB are separated by 122 nucleotidessmpB and Shew_1269 are separated by 202 nucleotides Shew_1267: Shew_1267 - phage integrase family protein (RefSeq), at 1,465,559 to 1,466,788 _1267 Shew_R0032: ssrA - no description, at 1,466,990 to 1,467,345 ssrA Shew_1268: smpB - SsrA-binding protein (RefSeq), at 1,467,468 to 1,467,959 smpB Shew_1269: Shew_1269 - cyclase/dehydrase (RefSeq), at 1,468,162 to 1,468,593 _1269 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -1 0 1at 1466.085 kb on - strand, within Shew_1267at 1466.143 kb on + strand, within Shew_1267at 1466.280 kb on - strand, within Shew_1267

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,466,085 - Shew_1267 0.43 -0.4
1,466,143 + Shew_1267 0.47 +0.1
1,466,280 - Shew_1267 0.59 +0.1

Or see this region's nucleotide sequence