Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13880

Experiment: Urea (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Urea (N)
3,126,169	+		PFLU_RS13875	0.50	+0.4
3,126,204	+		PFLU_RS13875	0.53	+0.5
3,126,230	+		PFLU_RS13875	0.56	+2.1
3,126,240	+		PFLU_RS13875	0.57	-0.4
3,126,240	+		PFLU_RS13875	0.57	+1.2
3,126,240	+		PFLU_RS13875	0.57	-1.9
3,126,261	+		PFLU_RS13875	0.58	+1.9
3,126,262	-		PFLU_RS13875	0.58	+1.3
3,126,378	-		PFLU_RS13875	0.69	+2.7
3,126,408	+		PFLU_RS13875	0.71	+0.1
3,126,413	-		PFLU_RS13875	0.72	+0.7
3,126,413	-		PFLU_RS13875	0.72	+1.7
3,126,417	-		PFLU_RS13875	0.72	-2.1
3,126,458	+		PFLU_RS13875	0.76	+1.6
3,126,465	-		PFLU_RS13875	0.76	-1.1
3,126,524	+		PFLU_RS13875	0.81	-0.7
3,126,524	+		PFLU_RS13875	0.81	-1.7
3,126,525	-		PFLU_RS13875	0.81	-2.7
3,126,525	-		PFLU_RS13875	0.81	+0.6
3,126,678	+				+0.6
3,126,678	+				-0.5
3,126,679	-				+1.7
3,126,746	-				-0.3
3,126,767	+				-0.3
3,126,767	+				-1.1
3,126,768	-				+1.7
3,126,785	+				-1.9
3,126,785	+				+0.0
3,126,786	-				-0.4
3,126,808	+				-0.7
3,126,808	+				-0.7
3,126,862	+				-0.3
3,126,862	+				-0.1
3,126,862	+				+2.5
3,126,862	+				+1.5
3,126,862	+				-1.9
3,126,862	+				+0.9
3,126,862	+				+1.9
3,126,862	+				+0.6
3,126,862	+				-0.1
3,126,862	+				-1.4
3,126,862	+				-0.4
3,126,862	+				+1.5
3,126,862	+				+0.9
3,126,862	+				-0.4
3,126,862	+				-2.6
3,126,863	-				+2.1
3,126,863	-				-0.4
3,126,863	-				+0.7
3,126,863	-				+0.1
3,126,863	-				-1.6
3,126,863	-				+0.3
3,126,863	-				-0.2
3,126,863	-				+0.3
3,126,863	-				-1.0
3,126,863	-				-1.7
3,126,863	-				-1.4
3,126,863	-				+0.1
3,126,863	-				+1.9
3,126,863	-				+1.1
3,126,863	-				-1.4
3,126,864	+				+1.2
3,126,864	+				+0.1
3,126,864	+				-0.6
3,126,864	+				+0.2
3,126,864	+				+1.8
3,126,864	+				-0.1
3,126,864	+				+1.5
3,126,864	+				-0.5
3,126,864	+				+1.4
3,126,864	+				-0.1
3,126,864	+				-0.5
3,126,864	+				-1.0
3,126,864	+				+0.4
3,126,864	+				-2.7
3,126,864	+				+1.7
3,126,864	+				-0.6
3,126,864	+				-1.7
3,126,864	+				+0.9
3,126,864	+				-0.1
3,126,864	+				+0.8
3,126,864	+				-1.7
3,126,864	+				-1.4
3,126,864	+				+0.9
3,126,865	-				-1.6
3,126,865	-				-0.1
3,126,865	-				-0.6
3,126,865	-				+0.3
3,126,865	-				+0.7
3,126,865	-				+1.9
3,126,865	-				-0.2
3,126,865	-				-0.1
3,126,865	-				+0.5
3,126,865	-				-1.4
3,126,865	-				-0.1
3,126,865	-				+1.4
3,126,865	-				+0.2
3,126,865	-				-1.9
3,126,865	-				-0.7
3,126,865	-				+0.4
3,126,865	-				-0.5
3,126,865	-				-1.6
3,126,865	-				-0.7
3,126,865	-				+1.6
3,126,865	-				+0.0
3,126,865	-				+0.4
3,126,865	-				+0.5
3,126,865	-				+1.1
3,126,880	-		PFLU_RS30785	0.16	-1.1
3,126,965	+		PFLU_RS30785	0.54	-0.1
3,126,965	+		PFLU_RS30785	0.54	+1.0
3,126,965	+		PFLU_RS30785	0.54	-1.4
3,126,965	+		PFLU_RS30785	0.54	+0.1
3,126,965	+		PFLU_RS30785	0.54	+0.5
3,126,965	+		PFLU_RS30785	0.54	+0.0
3,126,966	-		PFLU_RS30785	0.55	+1.5
3,126,966	-		PFLU_RS30785	0.55	+0.2
3,126,966	-		PFLU_RS30785	0.55	+0.0
3,127,027	+		PFLU_RS30785	0.83	+0.3
3,127,028	-		PFLU_RS30785	0.83	+0.3
3,127,028	-		PFLU_RS30785	0.83	-0.8
3,127,028	-		PFLU_RS30785	0.83	+0.9
3,127,028	-		PFLU_RS30785	0.83	-2.3
3,127,028	-		PFLU_RS30785	0.83	-3.4
3,127,028	-		PFLU_RS30785	0.83	+1.9
3,127,135	+		PFLU_RS13880	0.16	-0.3
3,127,135	+		PFLU_RS13880	0.16	+0.9
3,127,136	-		PFLU_RS13880	0.16	+0.7
3,127,136	-		PFLU_RS13880	0.16	+0.2
3,127,136	-		PFLU_RS13880	0.16	-0.4
3,127,136	-		PFLU_RS13880	0.16	+0.6
3,127,136	-		PFLU_RS13880	0.16	+0.9
3,127,136	-		PFLU_RS13880	0.16	-0.8
3,127,136	-		PFLU_RS13880	0.16	+3.6
3,127,136	-		PFLU_RS13880	0.16	+0.1
3,127,136	-		PFLU_RS13880	0.16	-0.2
3,127,136	-		PFLU_RS13880	0.16	-0.1
3,127,158	-		PFLU_RS13880	0.23	-2.1
3,127,163	+		PFLU_RS13880	0.25	-2.9
3,127,164	-		PFLU_RS13880	0.25	+0.9
3,127,192	+		PFLU_RS13880	0.34	-0.9
3,127,192	+		PFLU_RS13880	0.34	-0.7
3,127,192	+		PFLU_RS13880	0.34	-0.4
3,127,192	+		PFLU_RS13880	0.34	-1.4
3,127,192	+		PFLU_RS13880	0.34	-1.7
3,127,192	+		PFLU_RS13880	0.34	-0.1
3,127,192	+		PFLU_RS13880	0.34	-0.4
3,127,193	-		PFLU_RS13880	0.34	-0.1
3,127,193	-		PFLU_RS13880	0.34	+0.7
3,127,193	-		PFLU_RS13880	0.34	+0.3
3,127,193	-		PFLU_RS13880	0.34	+2.5
3,127,193	-		PFLU_RS13880	0.34	+1.3
3,127,197	-		PFLU_RS13880	0.36	+1.3
3,127,224	+		PFLU_RS13880	0.44	-1.7
3,127,225	-		PFLU_RS13880	0.45	+1.0
3,127,225	-		PFLU_RS13880	0.45	+0.1
3,127,225	-		PFLU_RS13880	0.45	-0.9
3,127,225	-		PFLU_RS13880	0.45	+0.7
3,127,239	+		PFLU_RS13880	0.49	-0.1
3,127,258	+		PFLU_RS13880	0.55	-1.4
3,127,259	-		PFLU_RS13880	0.56	+2.7
3,127,259	-		PFLU_RS13880	0.56	+0.7
3,127,259	-		PFLU_RS13880	0.56	-0.1
3,127,259	-		PFLU_RS13880	0.56	-0.1
3,127,259	-		PFLU_RS13880	0.56	+0.1
3,127,260	+		PFLU_RS13880	0.56	-1.9
3,127,260	+		PFLU_RS13880	0.56	+0.3
3,127,260	+		PFLU_RS13880	0.56	-0.1
3,127,260	+		PFLU_RS13880	0.56	+1.3
3,127,260	+		PFLU_RS13880	0.56	+2.1
3,127,261	-		PFLU_RS13880	0.56	+0.3
3,127,261	-		PFLU_RS13880	0.56	-1.9
3,127,261	-		PFLU_RS13880	0.56	-2.7
3,127,261	-		PFLU_RS13880	0.56	+1.0
3,127,261	-		PFLU_RS13880	0.56	-0.4
3,127,261	-		PFLU_RS13880	0.56	+0.5
3,127,261	-		PFLU_RS13880	0.56	+1.3
3,127,261	-		PFLU_RS13880	0.56	+0.2
3,127,261	-		PFLU_RS13880	0.56	+1.0
3,127,353	+		PFLU_RS13880	0.86	-2.3
3,127,353	+		PFLU_RS13880	0.86	+1.2
3,127,353	+		PFLU_RS13880	0.86	+0.3
3,127,353	+		PFLU_RS13880	0.86	-1.9
3,127,353	+		PFLU_RS13880	0.86	-0.1
3,127,353	+		PFLU_RS13880	0.86	-1.1
3,127,354	-		PFLU_RS13880	0.86	-1.1
3,127,354	-		PFLU_RS13880	0.86	-0.3
3,127,385	-				-0.7
3,127,414	-				-1.1
3,127,448	+				-0.9
3,127,448	+				+0.5
3,127,448	+				-0.2
3,127,448	+				-1.2
3,127,448	+				+1.7
3,127,448	+				+1.2
3,127,448	+				-0.9
3,127,448	+				+0.8
3,127,449	-				-0.4
3,127,449	-				+0.4
3,127,449	-				+0.0
3,127,449	-				-0.0
3,127,449	-				-1.4
3,127,449	-				-2.1
3,127,449	-				+1.5
3,127,449	-				+0.7
3,127,472	-				+1.5
3,127,546	+		PFLU_RS13885	0.33	-1.5
3,127,546	+		PFLU_RS13885	0.33	-0.7
3,127,553	+		PFLU_RS13885	0.36	-0.7
3,127,554	-		PFLU_RS13885	0.37	+0.1
3,127,576	-		PFLU_RS13885	0.46	+1.3
3,127,697	+				-2.8
3,127,697	+				-0.5
3,127,697	+				-1.5
3,127,697	+				-1.3
3,127,697	+				-0.4
3,127,697	+				+0.5
3,127,697	+				-1.5
3,127,697	+				-1.5
3,127,697	+				-1.1
3,127,698	-				+1.5
3,127,698	-				-0.1
3,127,698	-				+1.9
3,127,698	-				-0.1
3,127,698	-				-1.2
3,127,698	-				-1.1