Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1260

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1258 and Ga0059261_1259 are separated by 57 nucleotidesGa0059261_1259 and Ga0059261_1260 overlap by 4 nucleotidesGa0059261_1260 and Ga0059261_1261 are separated by 111 nucleotidesGa0059261_1261 and Ga0059261_1262 are separated by 9 nucleotides Ga0059261_1258: Ga0059261_1258 - TonB-dependent siderophore receptor, at 1,323,622 to 1,325,934 _1258 Ga0059261_1259: Ga0059261_1259 - Ribbon-helix-helix domain, at 1,325,992 to 1,326,270 _1259 Ga0059261_1260: Ga0059261_1260 - cobaltochelatase CobT subunit (EC 6.6.1.2), at 1,326,267 to 1,328,099 _1260 Ga0059261_1261: Ga0059261_1261 - hypothetical protein, at 1,328,211 to 1,328,768 _1261 Ga0059261_1262: Ga0059261_1262 - cobaltochelatase CobS subunit (EC 6.6.1.2), at 1,328,778 to 1,329,785 _1262 Position (kb) 1326 1327 1328 1329Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1325.364 kb on - strand, within Ga0059261_1258at 1325.366 kb on + strand, within Ga0059261_1258at 1325.367 kb on - strand, within Ga0059261_1258at 1325.367 kb on - strandat 1325.367 kb on - strand, within Ga0059261_1258at 1325.367 kb on - strand, within Ga0059261_1258at 1325.468 kb on + strand, within Ga0059261_1258at 1325.468 kb on + strand, within Ga0059261_1258at 1325.468 kb on + strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strandat 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.469 kb on - strand, within Ga0059261_1258at 1325.532 kb on - strand, within Ga0059261_1258at 1325.954 kb on + strandat 1325.954 kb on + strandat 1325.954 kb on + strandat 1325.954 kb on + strandat 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.187 kb on + strand, within Ga0059261_1259at 1326.188 kb on - strand, within Ga0059261_1259at 1326.188 kb on - strand, within Ga0059261_1259at 1326.355 kb on + strandat 1326.355 kb on + strandat 1326.355 kb on + strandat 1326.355 kb on + strandat 1326.356 kb on - strandat 1326.356 kb on - strandat 1326.356 kb on - strandat 1326.358 kb on + strandat 1326.358 kb on + strandat 1326.359 kb on - strandat 1326.454 kb on + strand, within Ga0059261_1260at 1326.454 kb on + strand, within Ga0059261_1260at 1326.455 kb on - strand, within Ga0059261_1260at 1326.455 kb on - strand, within Ga0059261_1260at 1326.664 kb on + strand, within Ga0059261_1260at 1326.664 kb on + strand, within Ga0059261_1260at 1326.665 kb on + strand, within Ga0059261_1260at 1326.665 kb on - strand, within Ga0059261_1260at 1326.928 kb on + strand, within Ga0059261_1260at 1326.928 kb on + strand, within Ga0059261_1260at 1326.928 kb on + strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1326.929 kb on - strand, within Ga0059261_1260at 1327.102 kb on + strand, within Ga0059261_1260at 1327.102 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.165 kb on + strand, within Ga0059261_1260at 1327.166 kb on - strand, within Ga0059261_1260at 1327.166 kb on - strand, within Ga0059261_1260at 1327.166 kb on - strand, within Ga0059261_1260at 1327.184 kb on + strand, within Ga0059261_1260at 1327.184 kb on + strand, within Ga0059261_1260at 1327.184 kb on + strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.185 kb on - strand, within Ga0059261_1260at 1327.187 kb on - strand, within Ga0059261_1260at 1327.187 kb on - strand, within Ga0059261_1260at 1327.774 kb on + strand, within Ga0059261_1260at 1327.775 kb on - strand, within Ga0059261_1260at 1328.058 kb on - strandat 1328.065 kb on + strandat 1328.126 kb on + strandat 1328.182 kb on - strandat 1328.523 kb on + strand, within Ga0059261_1261at 1328.524 kb on - strand, within Ga0059261_1261at 1328.524 kb on - strand, within Ga0059261_1261at 1328.833 kb on + strandat 1328.833 kb on + strandat 1328.834 kb on - strandat 1328.834 kb on - strandat 1328.836 kb on + strandat 1328.836 kb on + strandat 1328.837 kb on - strandat 1328.837 kb on - strandat 1328.837 kb on - strandat 1328.837 kb on - strandat 1328.924 kb on + strand, within Ga0059261_1262at 1329.056 kb on - strand, within Ga0059261_1262

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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1,325,364 - Ga0059261_1258 0.75 -1.9
1,325,366 + Ga0059261_1258 0.75 -2.3
1,325,367 - Ga0059261_1258 0.75 -2.8
1,325,367 - -0.5
1,325,367 - Ga0059261_1258 0.75 -1.8
1,325,367 - Ga0059261_1258 0.75 -2.6
1,325,468 + Ga0059261_1258 0.80 -2.2
1,325,468 + Ga0059261_1258 0.80 -3.6
1,325,468 + Ga0059261_1258 0.80 -2.3
1,325,469 - Ga0059261_1258 0.80 -1.9
1,325,469 - +0.5
1,325,469 - Ga0059261_1258 0.80 -1.1
1,325,469 - Ga0059261_1258 0.80 -2.9
1,325,469 - Ga0059261_1258 0.80 +0.3
1,325,469 - Ga0059261_1258 0.80 -1.7
1,325,532 - Ga0059261_1258 0.83 -4.0
1,325,954 + -2.0
1,325,954 + -2.4
1,325,954 + -3.0
1,325,954 + -0.3
1,326,187 + Ga0059261_1259 0.70 +0.1
1,326,187 + Ga0059261_1259 0.70 -0.3
1,326,187 + Ga0059261_1259 0.70 -0.3
1,326,187 + Ga0059261_1259 0.70 +0.4
1,326,187 + Ga0059261_1259 0.70 +0.4
1,326,188 - Ga0059261_1259 0.70 +0.3
1,326,188 - Ga0059261_1259 0.70 -0.1
1,326,355 + -0.1
1,326,355 + +0.4
1,326,355 + -0.2
1,326,355 + +0.2
1,326,356 - +0.5
1,326,356 - -0.4
1,326,356 - +0.2
1,326,358 + +0.0
1,326,358 + +0.5
1,326,359 - -0.3
1,326,454 + Ga0059261_1260 0.10 +0.2
1,326,454 + Ga0059261_1260 0.10 +0.6
1,326,455 - Ga0059261_1260 0.10 +0.3
1,326,455 - Ga0059261_1260 0.10 +0.4
1,326,664 + Ga0059261_1260 0.22 +0.4
1,326,664 + Ga0059261_1260 0.22 +0.3
1,326,665 + Ga0059261_1260 0.22 +0.2
1,326,665 - Ga0059261_1260 0.22 -0.4
1,326,928 + Ga0059261_1260 0.36 +0.9
1,326,928 + Ga0059261_1260 0.36 +0.4
1,326,928 + Ga0059261_1260 0.36 +1.3
1,326,929 - Ga0059261_1260 0.36 +0.2
1,326,929 - Ga0059261_1260 0.36 +0.1
1,326,929 - Ga0059261_1260 0.36 -0.3
1,326,929 - Ga0059261_1260 0.36 +0.1
1,327,102 + Ga0059261_1260 0.46 +0.0
1,327,102 + Ga0059261_1260 0.46 -0.5
1,327,165 + Ga0059261_1260 0.49 -0.8
1,327,165 + Ga0059261_1260 0.49 +0.2
1,327,165 + Ga0059261_1260 0.49 +0.5
1,327,165 + Ga0059261_1260 0.49 +0.7
1,327,165 + Ga0059261_1260 0.49 +0.5
1,327,166 - Ga0059261_1260 0.49 -0.1
1,327,166 - Ga0059261_1260 0.49 -0.4
1,327,166 - Ga0059261_1260 0.49 +0.3
1,327,184 + Ga0059261_1260 0.50 -0.2
1,327,184 + Ga0059261_1260 0.50 -0.0
1,327,184 + Ga0059261_1260 0.50 -0.4
1,327,185 - Ga0059261_1260 0.50 -0.1
1,327,185 - Ga0059261_1260 0.50 +0.5
1,327,185 - Ga0059261_1260 0.50 -0.7
1,327,185 - Ga0059261_1260 0.50 +0.2
1,327,187 - Ga0059261_1260 0.50 +0.6
1,327,187 - Ga0059261_1260 0.50 +0.1
1,327,774 + Ga0059261_1260 0.82 -0.2
1,327,775 - Ga0059261_1260 0.82 +0.3
1,328,058 - +0.6
1,328,065 + +0.1
1,328,126 + -0.0
1,328,182 - -1.0
1,328,523 + Ga0059261_1261 0.56 -0.5
1,328,524 - Ga0059261_1261 0.56 +0.4
1,328,524 - Ga0059261_1261 0.56 +0.4
1,328,833 + +0.6
1,328,833 + -0.3
1,328,834 - +0.5
1,328,834 - -0.7
1,328,836 + +0.1
1,328,836 + +2.1
1,328,837 - +0.7
1,328,837 - +0.4
1,328,837 - -0.1
1,328,837 - -0.6
1,328,924 + Ga0059261_1262 0.14 -0.3
1,329,056 - Ga0059261_1262 0.28 -0.4

Or see this region's nucleotide sequence