Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27075 and AO353_27080 are separated by 359 nucleotides AO353_27080 and AO353_27085 are separated by 172 nucleotides AO353_27085 and AO353_27090 are separated by 198 nucleotides
AO353_27075: AO353_27075 - aldehyde oxidase, at 5,931,102 to 5,933,933
_27075
AO353_27080: AO353_27080 - hypothetical protein, at 5,934,293 to 5,934,496
_27080
AO353_27085: AO353_27085 - hypothetical protein, at 5,934,669 to 5,934,899
_27085
AO353_27090: AO353_27090 - hypothetical protein, at 5,935,098 to 5,935,340
_27090
Position (kb) 5934
5935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5933.371 kb on + strand, within AO353_27075 at 5933.632 kb on + strand, within AO353_27075 at 5933.632 kb on + strand, within AO353_27075 at 5933.632 kb on + strand, within AO353_27075 at 5933.633 kb on - strand, within AO353_27075 at 5933.633 kb on - strand, within AO353_27075 at 5933.633 kb on - strand, within AO353_27075 at 5933.636 kb on + strand, within AO353_27075 at 5933.636 kb on + strand, within AO353_27075 at 5933.636 kb on + strand, within AO353_27075 at 5933.636 kb on + strand, within AO353_27075 at 5933.637 kb on - strand, within AO353_27075 at 5933.637 kb on - strand, within AO353_27075 at 5933.727 kb on + strand at 5933.727 kb on + strand at 5933.727 kb on + strand at 5933.727 kb on + strand at 5933.727 kb on + strand at 5933.728 kb on - strand at 5933.728 kb on - strand at 5933.954 kb on - strand at 5933.981 kb on + strand at 5934.045 kb on + strand at 5934.046 kb on - strand at 5934.060 kb on + strand at 5934.086 kb on + strand at 5934.086 kb on + strand at 5934.086 kb on + strand at 5934.087 kb on - strand at 5934.091 kb on + strand at 5934.092 kb on - strand at 5934.092 kb on - strand at 5934.092 kb on - strand at 5934.092 kb on - strand at 5934.131 kb on - strand at 5934.131 kb on - strand at 5934.176 kb on + strand at 5934.200 kb on + strand at 5934.201 kb on - strand at 5934.251 kb on + strand at 5934.251 kb on + strand at 5934.252 kb on - strand at 5934.252 kb on - strand at 5934.281 kb on + strand at 5934.281 kb on + strand at 5934.332 kb on - strand, within AO353_27080 at 5934.344 kb on - strand, within AO353_27080 at 5934.347 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.383 kb on + strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.384 kb on - strand, within AO353_27080 at 5934.387 kb on + strand, within AO353_27080 at 5934.387 kb on + strand, within AO353_27080 at 5934.444 kb on + strand, within AO353_27080 at 5934.444 kb on + strand, within AO353_27080 at 5934.445 kb on - strand, within AO353_27080 at 5934.445 kb on - strand, within AO353_27080 at 5934.445 kb on - strand, within AO353_27080 at 5934.445 kb on - strand at 5934.456 kb on + strand, within AO353_27080 at 5934.456 kb on + strand, within AO353_27080 at 5934.457 kb on - strand, within AO353_27080 at 5934.457 kb on - strand, within AO353_27080 at 5934.457 kb on - strand, within AO353_27080 at 5934.460 kb on + strand, within AO353_27080 at 5934.461 kb on - strand, within AO353_27080 at 5934.461 kb on - strand, within AO353_27080 at 5934.461 kb on - strand, within AO353_27080 at 5934.461 kb on - strand, within AO353_27080 at 5934.461 kb on - strand, within AO353_27080 at 5934.500 kb on + strand at 5934.501 kb on - strand at 5934.501 kb on - strand at 5934.501 kb on - strand at 5934.501 kb on - strand at 5934.501 kb on - strand at 5934.501 kb on - strand at 5934.501 kb on - strand at 5934.541 kb on + strand at 5934.541 kb on + strand at 5934.541 kb on + strand at 5934.541 kb on + strand at 5934.542 kb on - strand at 5934.542 kb on - strand at 5934.542 kb on - strand at 5934.542 kb on - strand at 5934.542 kb on - strand at 5934.542 kb on - strand at 5934.543 kb on + strand at 5934.543 kb on + strand at 5934.543 kb on + strand at 5934.544 kb on - strand at 5934.544 kb on - strand at 5934.544 kb on - strand at 5934.544 kb on - strand at 5934.544 kb on - strand at 5934.544 kb on - strand at 5934.631 kb on - strand at 5934.631 kb on - strand at 5934.631 kb on - strand at 5934.653 kb on + strand at 5934.653 kb on + strand at 5934.654 kb on - strand at 5934.654 kb on - strand at 5934.670 kb on + strand at 5934.710 kb on - strand, within AO353_27085 at 5934.895 kb on - strand at 5934.895 kb on - strand at 5935.055 kb on + strand at 5935.055 kb on + strand at 5935.116 kb on - strand at 5935.116 kb on - strand at 5935.116 kb on - strand at 5935.295 kb on - strand, within AO353_27090 at 5935.295 kb on - strand, within AO353_27090 at 5935.362 kb on + strand at 5935.363 kb on - strand at 5935.363 kb on - strand at 5935.363 kb on - strand at 5935.363 kb on - strand at 5935.363 kb on - strand at 5935.363 kb on - strand at 5935.378 kb on + strand at 5935.378 kb on + strand at 5935.382 kb on + strand at 5935.389 kb on + strand at 5935.390 kb on - strand at 5935.424 kb on + strand at 5935.424 kb on + strand at 5935.442 kb on + strand at 5935.442 kb on + strand at 5935.442 kb on + strand at 5935.442 kb on + strand at 5935.456 kb on + strand at 5935.457 kb on - strand at 5935.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 5,933,371 + AO353_27075 0.80 +0.3 5,933,632 + AO353_27075 0.89 -1.9 5,933,632 + AO353_27075 0.89 +0.5 5,933,632 + AO353_27075 0.89 +0.2 5,933,633 - AO353_27075 0.89 +0.7 5,933,633 - AO353_27075 0.89 -1.5 5,933,633 - AO353_27075 0.89 -1.5 5,933,636 + AO353_27075 0.89 -1.0 5,933,636 + AO353_27075 0.89 +0.7 5,933,636 + AO353_27075 0.89 -0.3 5,933,636 + AO353_27075 0.89 -0.2 5,933,637 - AO353_27075 0.90 -1.4 5,933,637 - AO353_27075 0.90 +0.4 5,933,727 + +0.7 5,933,727 + +1.1 5,933,727 + -2.3 5,933,727 + -0.4 5,933,727 + +0.5 5,933,728 - -0.9 5,933,728 - -0.3 5,933,954 - +0.7 5,933,981 + +0.1 5,934,045 + +1.3 5,934,046 - +0.7 5,934,060 + -0.6 5,934,086 + +0.5 5,934,086 + -3.1 5,934,086 + +0.6 5,934,087 - +0.7 5,934,091 + -1.4 5,934,092 - +0.3 5,934,092 - -0.3 5,934,092 - +0.7 5,934,092 - -1.2 5,934,131 - +0.7 5,934,131 - +0.6 5,934,176 + -0.8 5,934,200 + -2.1 5,934,201 - +0.6 5,934,251 + +1.3 5,934,251 + +0.2 5,934,252 - +0.2 5,934,252 - +0.2 5,934,281 + -1.0 5,934,281 + -0.8 5,934,332 - AO353_27080 0.19 +0.3 5,934,344 - AO353_27080 0.25 +0.1 5,934,347 + AO353_27080 0.26 -1.7 5,934,383 + AO353_27080 0.44 -1.0 5,934,383 + AO353_27080 0.44 -0.3 5,934,383 + AO353_27080 0.44 -2.0 5,934,383 + AO353_27080 0.44 +0.3 5,934,383 + AO353_27080 0.44 -0.9 5,934,383 + AO353_27080 0.44 -1.5 5,934,383 + -0.7 5,934,383 + AO353_27080 0.44 +0.3 5,934,383 + AO353_27080 0.44 -0.5 5,934,383 + AO353_27080 0.44 +0.3 5,934,383 + AO353_27080 0.44 +1.3 5,934,383 + AO353_27080 0.44 -0.8 5,934,383 + AO353_27080 0.44 -1.9 5,934,384 - AO353_27080 0.45 -0.3 5,934,384 - AO353_27080 0.45 -0.1 5,934,384 - AO353_27080 0.45 +0.3 5,934,384 - AO353_27080 0.45 -0.4 5,934,384 - AO353_27080 0.45 -1.5 5,934,384 - AO353_27080 0.45 -1.2 5,934,384 - AO353_27080 0.45 +0.3 5,934,384 - AO353_27080 0.45 -0.8 5,934,384 - AO353_27080 0.45 -1.0 5,934,384 - AO353_27080 0.45 -1.3 5,934,384 - AO353_27080 0.45 +0.7 5,934,384 - AO353_27080 0.45 -1.9 5,934,384 - AO353_27080 0.45 -1.0 5,934,384 - AO353_27080 0.45 -2.0 5,934,384 - AO353_27080 0.45 -0.1 5,934,384 - AO353_27080 0.45 -0.5 5,934,384 - AO353_27080 0.45 -0.3 5,934,384 - AO353_27080 0.45 -0.9 5,934,384 - AO353_27080 0.45 +0.3 5,934,387 + AO353_27080 0.46 -0.4 5,934,387 + AO353_27080 0.46 +0.1 5,934,444 + AO353_27080 0.74 -0.8 5,934,444 + AO353_27080 0.74 +0.6 5,934,445 - AO353_27080 0.75 -0.9 5,934,445 - AO353_27080 0.75 +1.3 5,934,445 - AO353_27080 0.75 +0.3 5,934,445 - -0.0 5,934,456 + AO353_27080 0.80 -3.1 5,934,456 + AO353_27080 0.80 +0.7 5,934,457 - AO353_27080 0.80 -0.4 5,934,457 - AO353_27080 0.80 +0.6 5,934,457 - AO353_27080 0.80 -0.9 5,934,460 + AO353_27080 0.82 -1.5 5,934,461 - AO353_27080 0.82 -2.2 5,934,461 - AO353_27080 0.82 -0.6 5,934,461 - AO353_27080 0.82 -0.8 5,934,461 - AO353_27080 0.82 +0.3 5,934,461 - AO353_27080 0.82 -0.8 5,934,500 + +0.4 5,934,501 - -0.3 5,934,501 - -0.6 5,934,501 - +0.0 5,934,501 - -0.4 5,934,501 - -0.1 5,934,501 - -0.3 5,934,501 - -0.6 5,934,541 + +0.6 5,934,541 + -1.3 5,934,541 + -0.1 5,934,541 + -0.6 5,934,542 - +0.2 5,934,542 - -1.0 5,934,542 - -0.4 5,934,542 - -0.7 5,934,542 - -1.3 5,934,542 - -2.2 5,934,543 + +1.3 5,934,543 + -0.5 5,934,543 + -3.0 5,934,544 - -0.3 5,934,544 - -0.5 5,934,544 - -0.7 5,934,544 - -0.4 5,934,544 - +0.3 5,934,544 - +0.3 5,934,631 - -2.4 5,934,631 - +0.4 5,934,631 - +0.5 5,934,653 + -0.7 5,934,653 + -0.1 5,934,654 - -2.0 5,934,654 - -0.5 5,934,670 + -1.0 5,934,710 - AO353_27085 0.18 +0.3 5,934,895 - -0.5 5,934,895 - -1.9 5,935,055 + -0.1 5,935,055 + -0.8 5,935,116 - -0.8 5,935,116 - +1.7 5,935,116 - +0.4 5,935,295 - AO353_27090 0.81 -0.1 5,935,295 - AO353_27090 0.81 -0.2 5,935,362 + -1.0 5,935,363 - -0.7 5,935,363 - +0.1 5,935,363 - +1.3 5,935,363 - +0.1 5,935,363 - -0.1 5,935,363 - +0.6 5,935,378 + +0.5 5,935,378 + -0.7 5,935,382 + -1.4 5,935,389 + +0.4 5,935,390 - -0.6 5,935,424 + -1.4 5,935,424 + -0.3 5,935,442 + +0.6 5,935,442 + -1.5 5,935,442 + -0.6 5,935,442 + +0.8 5,935,456 + +0.6 5,935,457 - +1.9 5,935,457 - +0.5
Or see this region's nucleotide sequence