Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23940 and AO353_23945 overlap by 11 nucleotides AO353_23945 and AO353_23950 are separated by 4 nucleotides
AO353_23940: AO353_23940 - hypothetical protein, at 5,254,197 to 5,256,332
_23940
AO353_23945: AO353_23945 - hypothetical protein, at 5,256,322 to 5,256,522
_23945
AO353_23950: AO353_23950 - hypothetical protein, at 5,256,527 to 5,257,492
_23950
Position (kb) 5256
5257 Strain fitness (log2 ratio) -1
0
1
2 at 5255.496 kb on + strand, within AO353_23940 at 5255.496 kb on + strand, within AO353_23940 at 5255.496 kb on + strand at 5255.496 kb on + strand, within AO353_23940 at 5255.497 kb on - strand, within AO353_23940 at 5255.497 kb on - strand, within AO353_23940 at 5255.497 kb on - strand, within AO353_23940 at 5255.497 kb on - strand at 5255.567 kb on + strand, within AO353_23940 at 5255.568 kb on - strand, within AO353_23940 at 5255.568 kb on - strand, within AO353_23940 at 5255.568 kb on - strand, within AO353_23940 at 5255.568 kb on - strand, within AO353_23940 at 5255.607 kb on + strand, within AO353_23940 at 5255.608 kb on - strand, within AO353_23940 at 5255.751 kb on + strand, within AO353_23940 at 5255.752 kb on - strand, within AO353_23940 at 5255.752 kb on - strand, within AO353_23940 at 5255.784 kb on + strand, within AO353_23940 at 5255.784 kb on + strand, within AO353_23940 at 5255.784 kb on + strand, within AO353_23940 at 5255.784 kb on + strand, within AO353_23940 at 5255.784 kb on + strand, within AO353_23940 at 5255.784 kb on + strand, within AO353_23940 at 5255.784 kb on + strand, within AO353_23940 at 5255.785 kb on - strand, within AO353_23940 at 5255.785 kb on - strand, within AO353_23940 at 5255.785 kb on - strand, within AO353_23940 at 5255.785 kb on - strand, within AO353_23940 at 5255.785 kb on - strand, within AO353_23940 at 5255.785 kb on - strand, within AO353_23940 at 5255.856 kb on + strand, within AO353_23940 at 5255.857 kb on - strand, within AO353_23940 at 5255.857 kb on - strand, within AO353_23940 at 5255.857 kb on - strand, within AO353_23940 at 5255.857 kb on - strand, within AO353_23940 at 5256.313 kb on + strand at 5256.313 kb on + strand at 5256.313 kb on + strand at 5256.313 kb on + strand at 5256.314 kb on - strand at 5256.341 kb on + strand at 5256.353 kb on - strand, within AO353_23945 at 5256.478 kb on + strand, within AO353_23945 at 5256.479 kb on - strand, within AO353_23945 at 5256.479 kb on - strand, within AO353_23945 at 5256.608 kb on + strand at 5256.608 kb on + strand at 5256.608 kb on + strand at 5256.609 kb on - strand at 5256.609 kb on - strand at 5256.609 kb on - strand at 5256.609 kb on - strand at 5256.609 kb on - strand at 5256.609 kb on - strand at 5256.609 kb on - strand at 5256.609 kb on - strand at 5257.175 kb on + strand, within AO353_23950 at 5257.175 kb on + strand, within AO353_23950 at 5257.175 kb on + strand, within AO353_23950 at 5257.352 kb on + strand at 5257.352 kb on + strand, within AO353_23950 at 5257.352 kb on + strand, within AO353_23950 at 5257.353 kb on - strand, within AO353_23950
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 5,255,496 + AO353_23940 0.61 -1.2 5,255,496 + AO353_23940 0.61 +1.6 5,255,496 + -1.4 5,255,496 + AO353_23940 0.61 -0.4 5,255,497 - AO353_23940 0.61 +0.6 5,255,497 - AO353_23940 0.61 +0.3 5,255,497 - AO353_23940 0.61 -0.1 5,255,497 - +2.2 5,255,567 + AO353_23940 0.64 +2.2 5,255,568 - AO353_23940 0.64 +0.7 5,255,568 - AO353_23940 0.64 -0.8 5,255,568 - AO353_23940 0.64 -0.1 5,255,568 - AO353_23940 0.64 -1.1 5,255,607 + AO353_23940 0.66 +1.6 5,255,608 - AO353_23940 0.66 -0.7 5,255,751 + AO353_23940 0.73 -0.8 5,255,752 - AO353_23940 0.73 -0.1 5,255,752 - AO353_23940 0.73 -1.1 5,255,784 + AO353_23940 0.74 -0.6 5,255,784 + AO353_23940 0.74 -1.2 5,255,784 + AO353_23940 0.74 +0.3 5,255,784 + AO353_23940 0.74 +1.4 5,255,784 + AO353_23940 0.74 +0.3 5,255,784 + AO353_23940 0.74 +1.2 5,255,784 + AO353_23940 0.74 -0.4 5,255,785 - AO353_23940 0.74 +0.5 5,255,785 - AO353_23940 0.74 -0.6 5,255,785 - AO353_23940 0.74 -0.6 5,255,785 - AO353_23940 0.74 -1.4 5,255,785 - AO353_23940 0.74 +1.2 5,255,785 - AO353_23940 0.74 +0.2 5,255,856 + AO353_23940 0.78 -0.2 5,255,857 - AO353_23940 0.78 -0.4 5,255,857 - AO353_23940 0.78 -0.8 5,255,857 - AO353_23940 0.78 -0.8 5,255,857 - AO353_23940 0.78 -1.7 5,256,313 + -0.8 5,256,313 + -0.5 5,256,313 + -1.5 5,256,313 + +0.8 5,256,314 - +0.2 5,256,341 + +0.1 5,256,353 - AO353_23945 0.15 -0.1 5,256,478 + AO353_23945 0.78 -0.6 5,256,479 - AO353_23945 0.78 +0.6 5,256,479 - AO353_23945 0.78 -0.8 5,256,608 + +1.2 5,256,608 + +1.8 5,256,608 + +0.8 5,256,609 - +1.2 5,256,609 - +0.7 5,256,609 - -0.6 5,256,609 - +0.8 5,256,609 - +0.4 5,256,609 - +0.4 5,256,609 - -0.8 5,256,609 - +1.0 5,257,175 + AO353_23950 0.67 +0.4 5,257,175 + AO353_23950 0.67 -1.6 5,257,175 + AO353_23950 0.67 +1.6 5,257,352 + -0.6 5,257,352 + AO353_23950 0.85 -0.1 5,257,352 + AO353_23950 0.85 -0.4 5,257,353 - AO353_23950 0.86 +0.8
Or see this region's nucleotide sequence