Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23810

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23805 and AO353_23810 are separated by 116 nucleotidesAO353_23810 and AO353_23815 are separated by 964 nucleotides AO353_23805: AO353_23805 - aldo/keto reductase, at 5,222,663 to 5,223,658 _23805 AO353_23810: AO353_23810 - transcriptional regulator, at 5,223,775 to 5,224,701 _23810 AO353_23815: AO353_23815 - hypothetical protein, at 5,225,666 to 5,225,854 _23815 Position (kb) 5223 5224 5225Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5222.799 kb on + strand, within AO353_23805at 5222.799 kb on + strand, within AO353_23805at 5222.799 kb on + strand, within AO353_23805at 5222.799 kb on + strand, within AO353_23805at 5222.799 kb on + strand, within AO353_23805at 5222.800 kb on - strand, within AO353_23805at 5222.800 kb on - strand, within AO353_23805at 5222.853 kb on - strand, within AO353_23805at 5223.046 kb on - strand, within AO353_23805at 5223.124 kb on - strand, within AO353_23805at 5223.157 kb on + strand, within AO353_23805at 5223.158 kb on - strand, within AO353_23805at 5223.158 kb on - strand, within AO353_23805at 5223.288 kb on + strand, within AO353_23805at 5223.289 kb on - strand, within AO353_23805at 5223.289 kb on - strand, within AO353_23805at 5223.291 kb on + strand, within AO353_23805at 5223.291 kb on + strand, within AO353_23805at 5223.291 kb on + strand, within AO353_23805at 5223.291 kb on + strand, within AO353_23805at 5223.291 kb on + strand, within AO353_23805at 5223.292 kb on - strand, within AO353_23805at 5223.292 kb on - strand, within AO353_23805at 5223.292 kb on - strand, within AO353_23805at 5223.292 kb on - strand, within AO353_23805at 5223.351 kb on + strand, within AO353_23805at 5223.351 kb on + strand, within AO353_23805at 5223.351 kb on + strand, within AO353_23805at 5223.352 kb on - strand, within AO353_23805at 5223.352 kb on - strand, within AO353_23805at 5223.352 kb on - strand, within AO353_23805at 5223.352 kb on - strand, within AO353_23805at 5223.352 kb on - strand, within AO353_23805at 5223.415 kb on + strandat 5223.489 kb on + strand, within AO353_23805at 5223.489 kb on + strand, within AO353_23805at 5223.489 kb on + strand, within AO353_23805at 5223.489 kb on + strand, within AO353_23805at 5223.489 kb on + strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.490 kb on - strand, within AO353_23805at 5223.579 kb on + strandat 5223.579 kb on + strandat 5223.580 kb on - strandat 5223.580 kb on - strandat 5223.580 kb on - strandat 5223.711 kb on + strandat 5223.748 kb on + strandat 5223.786 kb on + strandat 5223.786 kb on + strandat 5223.787 kb on - strandat 5223.787 kb on - strandat 5223.967 kb on + strand, within AO353_23810at 5223.967 kb on + strand, within AO353_23810at 5223.967 kb on + strand, within AO353_23810at 5224.059 kb on + strand, within AO353_23810at 5224.285 kb on + strand, within AO353_23810at 5224.286 kb on - strand, within AO353_23810at 5224.286 kb on - strand, within AO353_23810at 5224.394 kb on + strand, within AO353_23810at 5224.394 kb on + strand, within AO353_23810at 5224.394 kb on + strand, within AO353_23810at 5224.395 kb on - strand, within AO353_23810at 5224.395 kb on - strand, within AO353_23810at 5224.395 kb on - strand, within AO353_23810at 5224.456 kb on + strand, within AO353_23810at 5224.502 kb on - strand, within AO353_23810at 5224.550 kb on + strand, within AO353_23810at 5224.687 kb on + strandat 5224.687 kb on + strandat 5224.688 kb on - strandat 5224.696 kb on - strandat 5224.696 kb on - strandat 5224.696 kb on - strandat 5224.762 kb on + strandat 5224.763 kb on - strandat 5224.893 kb on + strandat 5224.894 kb on - strandat 5224.894 kb on - strandat 5224.894 kb on - strandat 5224.916 kb on - strandat 5224.967 kb on + strandat 5224.987 kb on - strandat 5224.994 kb on + strandat 5225.009 kb on - strandat 5225.051 kb on + strandat 5225.083 kb on + strandat 5225.094 kb on + strandat 5225.095 kb on - strandat 5225.095 kb on - strandat 5225.098 kb on + strandat 5225.098 kb on + strandat 5225.098 kb on + strandat 5225.099 kb on - strandat 5225.124 kb on + strandat 5225.125 kb on - strandat 5225.135 kb on - strandat 5225.140 kb on + strandat 5225.140 kb on + strandat 5225.175 kb on + strandat 5225.175 kb on + strandat 5225.176 kb on - strandat 5225.259 kb on + strandat 5225.345 kb on + strandat 5225.345 kb on + strandat 5225.391 kb on - strandat 5225.446 kb on + strandat 5225.446 kb on + strandat 5225.446 kb on + strandat 5225.447 kb on - strandat 5225.562 kb on - strandat 5225.627 kb on + strandat 5225.627 kb on + strandat 5225.628 kb on - strandat 5225.638 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.642 kb on + strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strandat 5225.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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5,222,799 + AO353_23805 0.14 -0.8
5,222,799 + AO353_23805 0.14 +0.4
5,222,799 + AO353_23805 0.14 -0.8
5,222,799 + AO353_23805 0.14 -0.8
5,222,799 + AO353_23805 0.14 -0.7
5,222,800 - AO353_23805 0.14 +0.1
5,222,800 - AO353_23805 0.14 +0.6
5,222,853 - AO353_23805 0.19 +0.2
5,223,046 - AO353_23805 0.38 +0.5
5,223,124 - AO353_23805 0.46 +1.4
5,223,157 + AO353_23805 0.50 +0.8
5,223,158 - AO353_23805 0.50 +0.5
5,223,158 - AO353_23805 0.50 -3.1
5,223,288 + AO353_23805 0.63 +0.9
5,223,289 - AO353_23805 0.63 +0.5
5,223,289 - AO353_23805 0.63 +0.4
5,223,291 + AO353_23805 0.63 +1.4
5,223,291 + AO353_23805 0.63 -0.4
5,223,291 + AO353_23805 0.63 -0.4
5,223,291 + AO353_23805 0.63 +0.0
5,223,291 + AO353_23805 0.63 -0.6
5,223,292 - AO353_23805 0.63 -1.8
5,223,292 - AO353_23805 0.63 +0.2
5,223,292 - AO353_23805 0.63 -0.3
5,223,292 - AO353_23805 0.63 -0.2
5,223,351 + AO353_23805 0.69 -0.5
5,223,351 + AO353_23805 0.69 +1.4
5,223,351 + AO353_23805 0.69 -0.8
5,223,352 - AO353_23805 0.69 +1.6
5,223,352 - AO353_23805 0.69 -1.5
5,223,352 - AO353_23805 0.69 +1.7
5,223,352 - AO353_23805 0.69 -1.5
5,223,352 - AO353_23805 0.69 -1.0
5,223,415 + +0.4
5,223,489 + AO353_23805 0.83 -0.0
5,223,489 + AO353_23805 0.83 +0.0
5,223,489 + AO353_23805 0.83 +1.2
5,223,489 + AO353_23805 0.83 -1.8
5,223,489 + AO353_23805 0.83 +0.5
5,223,490 - AO353_23805 0.83 +0.9
5,223,490 - AO353_23805 0.83 -1.8
5,223,490 - AO353_23805 0.83 +1.4
5,223,490 - AO353_23805 0.83 -1.4
5,223,490 - AO353_23805 0.83 -0.1
5,223,490 - AO353_23805 0.83 +0.2
5,223,490 - AO353_23805 0.83 +0.2
5,223,490 - AO353_23805 0.83 +0.2
5,223,579 + +0.4
5,223,579 + +0.7
5,223,580 - -1.2
5,223,580 - -0.9
5,223,580 - -0.6
5,223,711 + -0.3
5,223,748 + -2.0
5,223,786 + -0.4
5,223,786 + -0.1
5,223,787 - -1.4
5,223,787 - +0.5
5,223,967 + AO353_23810 0.21 -0.8
5,223,967 + AO353_23810 0.21 +0.6
5,223,967 + AO353_23810 0.21 +0.3
5,224,059 + AO353_23810 0.31 +2.2
5,224,285 + AO353_23810 0.55 -1.6
5,224,286 - AO353_23810 0.55 -0.1
5,224,286 - AO353_23810 0.55 -0.8
5,224,394 + AO353_23810 0.67 -0.2
5,224,394 + AO353_23810 0.67 -0.4
5,224,394 + AO353_23810 0.67 -0.6
5,224,395 - AO353_23810 0.67 -1.2
5,224,395 - AO353_23810 0.67 -0.6
5,224,395 - AO353_23810 0.67 -0.8
5,224,456 + AO353_23810 0.73 -1.0
5,224,502 - AO353_23810 0.78 -0.5
5,224,550 + AO353_23810 0.84 -0.6
5,224,687 + +1.2
5,224,687 + +0.2
5,224,688 - +0.6
5,224,696 - -0.6
5,224,696 - -0.2
5,224,696 - -0.7
5,224,762 + -0.8
5,224,763 - +0.7
5,224,893 + +0.7
5,224,894 - -0.9
5,224,894 - -0.3
5,224,894 - +0.7
5,224,916 - +0.3
5,224,967 + +1.7
5,224,987 - +1.4
5,224,994 + -0.9
5,225,009 - -0.4
5,225,051 + +0.8
5,225,083 + -0.4
5,225,094 + -2.0
5,225,095 - -0.1
5,225,095 - +0.4
5,225,098 + +0.6
5,225,098 + -1.2
5,225,098 + +1.3
5,225,099 - -1.2
5,225,124 + -1.8
5,225,125 - -0.8
5,225,135 - +0.4
5,225,140 + -0.4
5,225,140 + +1.3
5,225,175 + -0.4
5,225,175 + -0.1
5,225,176 - -1.4
5,225,259 + -0.4
5,225,345 + -0.8
5,225,345 + +0.7
5,225,391 - +0.2
5,225,446 + +0.5
5,225,446 + +0.7
5,225,446 + +1.6
5,225,447 - +0.3
5,225,562 - -2.3
5,225,627 + -0.2
5,225,627 + -0.6
5,225,628 - -0.8
5,225,638 + -1.0
5,225,642 + -0.5
5,225,642 + -0.3
5,225,642 + -0.0
5,225,642 + +0.6
5,225,642 + +0.6
5,225,642 + +1.4
5,225,642 + +1.2
5,225,642 + +0.9
5,225,642 + -0.4
5,225,642 + -0.2
5,225,642 + +0.5
5,225,642 + -0.4
5,225,642 + -0.8
5,225,642 + +1.0
5,225,642 + -1.5
5,225,642 + -0.2
5,225,643 - -1.1
5,225,643 - +1.7
5,225,643 - +1.2
5,225,643 - -2.3
5,225,643 - -0.2
5,225,643 - +0.6
5,225,643 - -1.2
5,225,643 - +0.3
5,225,643 - -0.3
5,225,643 - -1.2
5,225,643 - -0.8

Or see this region's nucleotide sequence