Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23780 and AO353_23785 are separated by 100 nucleotides AO353_23785 and AO353_23790 overlap by 1 nucleotides AO353_23790 and AO353_23795 are separated by 141 nucleotides
AO353_23780: AO353_23780 - hydroxyacid dehydrogenase, at 5,217,557 to 5,218,510
_23780
AO353_23785: AO353_23785 - hypothetical protein, at 5,218,611 to 5,219,045
_23785
AO353_23790: AO353_23790 - metal-binding protein, at 5,219,045 to 5,219,488
_23790
AO353_23795: AO353_23795 - chemotaxis protein, at 5,219,630 to 5,221,624
_23795
Position (kb) 5218
5219
5220 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5217.651 kb on + strand at 5217.652 kb on - strand at 5217.652 kb on - strand at 5217.674 kb on + strand, within AO353_23780 at 5217.674 kb on + strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.675 kb on - strand, within AO353_23780 at 5217.946 kb on + strand, within AO353_23780 at 5217.947 kb on - strand, within AO353_23780 at 5218.080 kb on + strand, within AO353_23780 at 5218.200 kb on + strand, within AO353_23780 at 5218.200 kb on + strand, within AO353_23780 at 5218.200 kb on + strand, within AO353_23780 at 5218.201 kb on - strand, within AO353_23780 at 5218.201 kb on - strand, within AO353_23780 at 5218.201 kb on - strand, within AO353_23780 at 5218.404 kb on + strand, within AO353_23780 at 5218.404 kb on + strand, within AO353_23780 at 5218.405 kb on - strand, within AO353_23780 at 5218.405 kb on - strand, within AO353_23780 at 5218.413 kb on - strand, within AO353_23780 at 5218.545 kb on + strand at 5218.545 kb on + strand at 5218.546 kb on - strand at 5218.546 kb on - strand at 5218.546 kb on - strand at 5218.564 kb on + strand at 5218.564 kb on + strand at 5218.577 kb on - strand at 5218.587 kb on + strand at 5218.651 kb on + strand at 5218.780 kb on + strand, within AO353_23785 at 5218.789 kb on + strand, within AO353_23785 at 5218.790 kb on - strand, within AO353_23785 at 5219.023 kb on - strand at 5219.032 kb on + strand at 5219.032 kb on + strand at 5219.033 kb on - strand at 5219.109 kb on + strand, within AO353_23790 at 5219.109 kb on + strand, within AO353_23790 at 5219.109 kb on + strand at 5219.109 kb on + strand, within AO353_23790 at 5219.158 kb on + strand, within AO353_23790 at 5219.493 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.556 kb on + strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.557 kb on - strand at 5219.570 kb on - strand at 5219.580 kb on - strand at 5219.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 5,217,651 + -0.0 5,217,652 - -0.2 5,217,652 - -2.0 5,217,674 + AO353_23780 0.12 +0.2 5,217,674 + AO353_23780 0.12 -0.6 5,217,675 - AO353_23780 0.12 +2.7 5,217,675 - AO353_23780 0.12 +0.9 5,217,675 - AO353_23780 0.12 -2.0 5,217,675 - AO353_23780 0.12 +0.5 5,217,675 - AO353_23780 0.12 +2.5 5,217,946 + AO353_23780 0.41 -0.3 5,217,947 - AO353_23780 0.41 -2.1 5,218,080 + AO353_23780 0.55 +0.3 5,218,200 + AO353_23780 0.67 -0.1 5,218,200 + AO353_23780 0.67 -0.6 5,218,200 + AO353_23780 0.67 +0.2 5,218,201 - AO353_23780 0.68 +0.7 5,218,201 - AO353_23780 0.68 +0.5 5,218,201 - AO353_23780 0.68 -0.4 5,218,404 + AO353_23780 0.89 -0.8 5,218,404 + AO353_23780 0.89 -0.8 5,218,405 - AO353_23780 0.89 +0.5 5,218,405 - AO353_23780 0.89 +1.2 5,218,413 - AO353_23780 0.90 -0.5 5,218,545 + -0.7 5,218,545 + -0.4 5,218,546 - -1.8 5,218,546 - -1.6 5,218,546 - -1.7 5,218,564 + -0.0 5,218,564 + -0.6 5,218,577 - -0.8 5,218,587 + +0.7 5,218,651 + -0.2 5,218,780 + AO353_23785 0.39 -0.7 5,218,789 + AO353_23785 0.41 -1.0 5,218,790 - AO353_23785 0.41 +0.2 5,219,023 - +1.2 5,219,032 + -1.3 5,219,032 + +0.8 5,219,033 - -1.2 5,219,109 + AO353_23790 0.14 -0.2 5,219,109 + AO353_23790 0.14 -0.4 5,219,109 + +1.2 5,219,109 + AO353_23790 0.14 -0.4 5,219,158 + AO353_23790 0.25 -1.4 5,219,493 + +0.6 5,219,556 + -0.4 5,219,556 + -2.6 5,219,556 + -0.0 5,219,556 + +1.2 5,219,556 + -0.2 5,219,556 + -0.4 5,219,556 + -0.8 5,219,556 + +0.4 5,219,556 + -1.6 5,219,556 + -0.6 5,219,557 - -1.5 5,219,557 - -0.7 5,219,557 - +0.3 5,219,557 - -0.8 5,219,557 - +0.4 5,219,557 - +0.5 5,219,557 - +0.2 5,219,570 - +0.4 5,219,580 - -0.6 5,219,741 - +0.2
Or see this region's nucleotide sequence