Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16010

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16005 and AO353_16010 overlap by 1 nucleotidesAO353_16010 and AO353_16015 are separated by 175 nucleotides AO353_16005: AO353_16005 - copper oxidase, at 3,537,792 to 3,539,168 _16005 AO353_16010: AO353_16010 - zinc-binding protein, at 3,539,168 to 3,539,665 _16010 AO353_16015: AO353_16015 - tRNA (mo5U34)-methyltransferase, at 3,539,841 to 3,540,797 _16015 Position (kb) 3539 3540Strain fitness (log2 ratio) -2 -1 0 1 2at 3538.194 kb on + strand, within AO353_16005at 3538.194 kb on + strand, within AO353_16005at 3538.194 kb on + strand, within AO353_16005at 3538.195 kb on - strand, within AO353_16005at 3538.201 kb on - strand, within AO353_16005at 3538.291 kb on - strand, within AO353_16005at 3538.491 kb on + strand, within AO353_16005at 3538.492 kb on - strand, within AO353_16005at 3538.492 kb on - strand, within AO353_16005at 3538.527 kb on + strand, within AO353_16005at 3538.528 kb on - strand, within AO353_16005at 3538.528 kb on - strand, within AO353_16005at 3538.528 kb on - strand, within AO353_16005at 3538.901 kb on + strand, within AO353_16005at 3538.902 kb on - strand, within AO353_16005at 3538.902 kb on - strand, within AO353_16005at 3538.923 kb on + strand, within AO353_16005at 3539.025 kb on + strand, within AO353_16005at 3539.025 kb on + strand, within AO353_16005at 3539.040 kb on + strandat 3539.040 kb on + strandat 3539.040 kb on + strandat 3539.040 kb on + strandat 3539.041 kb on - strandat 3539.041 kb on - strandat 3539.129 kb on + strandat 3539.129 kb on + strandat 3539.130 kb on - strandat 3539.663 kb on + strandat 3539.663 kb on + strandat 3539.664 kb on - strandat 3539.664 kb on - strandat 3539.664 kb on - strandat 3539.664 kb on - strandat 3539.769 kb on + strandat 3539.769 kb on + strandat 3539.769 kb on + strandat 3539.770 kb on - strandat 3539.770 kb on - strandat 3539.778 kb on - strandat 3539.795 kb on + strandat 3539.795 kb on + strandat 3539.795 kb on + strandat 3539.796 kb on - strandat 3539.796 kb on - strandat 3539.796 kb on - strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.897 kb on + strandat 3539.898 kb on - strandat 3539.898 kb on - strandat 3539.938 kb on + strand, within AO353_16015at 3539.938 kb on + strand, within AO353_16015at 3539.938 kb on + strand, within AO353_16015at 3539.939 kb on - strand, within AO353_16015at 3539.939 kb on - strand, within AO353_16015at 3539.939 kb on - strand, within AO353_16015at 3540.211 kb on + strand, within AO353_16015at 3540.211 kb on + strand, within AO353_16015at 3540.211 kb on + strand, within AO353_16015at 3540.212 kb on - strand, within AO353_16015at 3540.212 kb on - strand, within AO353_16015at 3540.212 kb on - strand, within AO353_16015at 3540.310 kb on + strand, within AO353_16015at 3540.310 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.403 kb on + strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.404 kb on - strand, within AO353_16015at 3540.407 kb on - strand, within AO353_16015at 3540.440 kb on + strand, within AO353_16015at 3540.440 kb on + strand, within AO353_16015at 3540.441 kb on - strand, within AO353_16015

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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3,538,194 + AO353_16005 0.29 +0.4
3,538,194 + AO353_16005 0.29 -0.7
3,538,194 + AO353_16005 0.29 -0.0
3,538,195 - AO353_16005 0.29 +0.8
3,538,201 - AO353_16005 0.30 -2.5
3,538,291 - AO353_16005 0.36 -1.4
3,538,491 + AO353_16005 0.51 -1.3
3,538,492 - AO353_16005 0.51 -0.6
3,538,492 - AO353_16005 0.51 +0.5
3,538,527 + AO353_16005 0.53 +0.2
3,538,528 - AO353_16005 0.53 -1.6
3,538,528 - AO353_16005 0.53 +0.8
3,538,528 - AO353_16005 0.53 +0.5
3,538,901 + AO353_16005 0.81 -1.5
3,538,902 - AO353_16005 0.81 -1.4
3,538,902 - AO353_16005 0.81 +1.0
3,538,923 + AO353_16005 0.82 -0.0
3,539,025 + AO353_16005 0.90 -0.8
3,539,025 + AO353_16005 0.90 +0.3
3,539,040 + +0.3
3,539,040 + +1.8
3,539,040 + +0.2
3,539,040 + +0.8
3,539,041 - -1.8
3,539,041 - -1.8
3,539,129 + -0.0
3,539,129 + -0.7
3,539,130 - -0.6
3,539,663 + +1.5
3,539,663 + +0.0
3,539,664 - +1.0
3,539,664 - -0.2
3,539,664 - +0.3
3,539,664 - -1.4
3,539,769 + +1.3
3,539,769 + -0.4
3,539,769 + -1.0
3,539,770 - -1.0
3,539,770 - -0.1
3,539,778 - -0.3
3,539,795 + +1.1
3,539,795 + -2.0
3,539,795 + +0.3
3,539,796 - +0.9
3,539,796 - -0.4
3,539,796 - +0.7
3,539,897 + +0.3
3,539,897 + -1.0
3,539,897 + +0.0
3,539,897 + +0.2
3,539,897 + -0.6
3,539,897 + +0.4
3,539,897 + +0.5
3,539,897 + +1.6
3,539,897 + +0.4
3,539,897 + -0.5
3,539,897 + -0.6
3,539,897 + -0.2
3,539,897 + -1.0
3,539,897 + +0.0
3,539,898 - -1.9
3,539,898 - +1.4
3,539,938 + AO353_16015 0.10 +1.2
3,539,938 + AO353_16015 0.10 -0.9
3,539,938 + AO353_16015 0.10 -1.2
3,539,939 - AO353_16015 0.10 +0.8
3,539,939 - AO353_16015 0.10 +0.4
3,539,939 - AO353_16015 0.10 +1.8
3,540,211 + AO353_16015 0.39 -0.7
3,540,211 + AO353_16015 0.39 -0.4
3,540,211 + AO353_16015 0.39 -0.3
3,540,212 - AO353_16015 0.39 +1.4
3,540,212 - AO353_16015 0.39 +0.4
3,540,212 - AO353_16015 0.39 +0.6
3,540,310 + AO353_16015 0.49 +0.1
3,540,310 + AO353_16015 0.49 +0.3
3,540,403 + AO353_16015 0.59 +0.5
3,540,403 + AO353_16015 0.59 -0.8
3,540,403 + AO353_16015 0.59 -0.7
3,540,403 + AO353_16015 0.59 -1.0
3,540,403 + AO353_16015 0.59 -0.2
3,540,403 + AO353_16015 0.59 -0.2
3,540,403 + AO353_16015 0.59 -0.2
3,540,403 + AO353_16015 0.59 -0.6
3,540,403 + AO353_16015 0.59 +0.3
3,540,403 + AO353_16015 0.59 -0.6
3,540,403 + AO353_16015 0.59 -1.4
3,540,403 + AO353_16015 0.59 -0.3
3,540,403 + AO353_16015 0.59 -0.7
3,540,403 + AO353_16015 0.59 -0.0
3,540,403 + AO353_16015 0.59 +0.9
3,540,403 + AO353_16015 0.59 -1.6
3,540,403 + AO353_16015 0.59 -0.5
3,540,403 + AO353_16015 0.59 -0.4
3,540,403 + AO353_16015 0.59 +0.4
3,540,403 + AO353_16015 0.59 -1.7
3,540,403 + AO353_16015 0.59 +1.4
3,540,404 - AO353_16015 0.59 -1.6
3,540,404 - AO353_16015 0.59 -0.2
3,540,404 - AO353_16015 0.59 -0.6
3,540,404 - AO353_16015 0.59 +0.2
3,540,404 - AO353_16015 0.59 -0.9
3,540,404 - AO353_16015 0.59 -0.5
3,540,404 - AO353_16015 0.59 -0.4
3,540,404 - AO353_16015 0.59 +2.1
3,540,404 - AO353_16015 0.59 -0.3
3,540,404 - AO353_16015 0.59 +0.7
3,540,404 - AO353_16015 0.59 -0.1
3,540,404 - AO353_16015 0.59 +0.2
3,540,404 - AO353_16015 0.59 +0.7
3,540,404 - AO353_16015 0.59 -1.2
3,540,404 - AO353_16015 0.59 -0.3
3,540,404 - AO353_16015 0.59 +0.4
3,540,404 - AO353_16015 0.59 -0.8
3,540,404 - AO353_16015 0.59 +0.5
3,540,407 - AO353_16015 0.59 +0.9
3,540,440 + AO353_16015 0.63 -0.3
3,540,440 + AO353_16015 0.63 -0.7
3,540,441 - AO353_16015 0.63 -2.2

Or see this region's nucleotide sequence