Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16005 and AO353_16010 overlap by 1 nucleotides AO353_16010 and AO353_16015 are separated by 175 nucleotides
AO353_16005: AO353_16005 - copper oxidase, at 3,537,792 to 3,539,168
_16005
AO353_16010: AO353_16010 - zinc-binding protein, at 3,539,168 to 3,539,665
_16010
AO353_16015: AO353_16015 - tRNA (mo5U34)-methyltransferase, at 3,539,841 to 3,540,797
_16015
Position (kb)
3539
3540 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3538.194 kb on + strand, within AO353_16005 at 3538.194 kb on + strand, within AO353_16005 at 3538.194 kb on + strand, within AO353_16005 at 3538.195 kb on - strand, within AO353_16005 at 3538.201 kb on - strand, within AO353_16005 at 3538.291 kb on - strand, within AO353_16005 at 3538.491 kb on + strand, within AO353_16005 at 3538.492 kb on - strand, within AO353_16005 at 3538.492 kb on - strand, within AO353_16005 at 3538.527 kb on + strand, within AO353_16005 at 3538.528 kb on - strand, within AO353_16005 at 3538.528 kb on - strand, within AO353_16005 at 3538.528 kb on - strand, within AO353_16005 at 3538.901 kb on + strand, within AO353_16005 at 3538.902 kb on - strand, within AO353_16005 at 3538.902 kb on - strand, within AO353_16005 at 3538.923 kb on + strand, within AO353_16005 at 3539.025 kb on + strand, within AO353_16005 at 3539.025 kb on + strand, within AO353_16005 at 3539.040 kb on + strand at 3539.040 kb on + strand at 3539.040 kb on + strand at 3539.040 kb on + strand at 3539.041 kb on - strand at 3539.041 kb on - strand at 3539.129 kb on + strand at 3539.129 kb on + strand at 3539.130 kb on - strand at 3539.663 kb on + strand at 3539.663 kb on + strand at 3539.664 kb on - strand at 3539.664 kb on - strand at 3539.664 kb on - strand at 3539.664 kb on - strand at 3539.769 kb on + strand at 3539.769 kb on + strand at 3539.769 kb on + strand at 3539.770 kb on - strand at 3539.770 kb on - strand at 3539.778 kb on - strand at 3539.795 kb on + strand at 3539.795 kb on + strand at 3539.795 kb on + strand at 3539.796 kb on - strand at 3539.796 kb on - strand at 3539.796 kb on - strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.897 kb on + strand at 3539.898 kb on - strand at 3539.898 kb on - strand at 3539.938 kb on + strand, within AO353_16015 at 3539.938 kb on + strand, within AO353_16015 at 3539.938 kb on + strand, within AO353_16015 at 3539.939 kb on - strand, within AO353_16015 at 3539.939 kb on - strand, within AO353_16015 at 3539.939 kb on - strand, within AO353_16015 at 3540.211 kb on + strand, within AO353_16015 at 3540.211 kb on + strand, within AO353_16015 at 3540.211 kb on + strand, within AO353_16015 at 3540.212 kb on - strand, within AO353_16015 at 3540.212 kb on - strand, within AO353_16015 at 3540.212 kb on - strand, within AO353_16015 at 3540.310 kb on + strand, within AO353_16015 at 3540.310 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.403 kb on + strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.404 kb on - strand, within AO353_16015 at 3540.407 kb on - strand, within AO353_16015 at 3540.440 kb on + strand, within AO353_16015 at 3540.440 kb on + strand, within AO353_16015 at 3540.441 kb on - strand, within AO353_16015
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 3,538,194 + AO353_16005 0.29 +0.4 3,538,194 + AO353_16005 0.29 -0.7 3,538,194 + AO353_16005 0.29 -0.0 3,538,195 - AO353_16005 0.29 +0.8 3,538,201 - AO353_16005 0.30 -2.5 3,538,291 - AO353_16005 0.36 -1.4 3,538,491 + AO353_16005 0.51 -1.3 3,538,492 - AO353_16005 0.51 -0.6 3,538,492 - AO353_16005 0.51 +0.5 3,538,527 + AO353_16005 0.53 +0.2 3,538,528 - AO353_16005 0.53 -1.6 3,538,528 - AO353_16005 0.53 +0.8 3,538,528 - AO353_16005 0.53 +0.5 3,538,901 + AO353_16005 0.81 -1.5 3,538,902 - AO353_16005 0.81 -1.4 3,538,902 - AO353_16005 0.81 +1.0 3,538,923 + AO353_16005 0.82 -0.0 3,539,025 + AO353_16005 0.90 -0.8 3,539,025 + AO353_16005 0.90 +0.3 3,539,040 + +0.3 3,539,040 + +1.8 3,539,040 + +0.2 3,539,040 + +0.8 3,539,041 - -1.8 3,539,041 - -1.8 3,539,129 + -0.0 3,539,129 + -0.7 3,539,130 - -0.6 3,539,663 + +1.5 3,539,663 + +0.0 3,539,664 - +1.0 3,539,664 - -0.2 3,539,664 - +0.3 3,539,664 - -1.4 3,539,769 + +1.3 3,539,769 + -0.4 3,539,769 + -1.0 3,539,770 - -1.0 3,539,770 - -0.1 3,539,778 - -0.3 3,539,795 + +1.1 3,539,795 + -2.0 3,539,795 + +0.3 3,539,796 - +0.9 3,539,796 - -0.4 3,539,796 - +0.7 3,539,897 + +0.3 3,539,897 + -1.0 3,539,897 + +0.0 3,539,897 + +0.2 3,539,897 + -0.6 3,539,897 + +0.4 3,539,897 + +0.5 3,539,897 + +1.6 3,539,897 + +0.4 3,539,897 + -0.5 3,539,897 + -0.6 3,539,897 + -0.2 3,539,897 + -1.0 3,539,897 + +0.0 3,539,898 - -1.9 3,539,898 - +1.4 3,539,938 + AO353_16015 0.10 +1.2 3,539,938 + AO353_16015 0.10 -0.9 3,539,938 + AO353_16015 0.10 -1.2 3,539,939 - AO353_16015 0.10 +0.8 3,539,939 - AO353_16015 0.10 +0.4 3,539,939 - AO353_16015 0.10 +1.8 3,540,211 + AO353_16015 0.39 -0.7 3,540,211 + AO353_16015 0.39 -0.4 3,540,211 + AO353_16015 0.39 -0.3 3,540,212 - AO353_16015 0.39 +1.4 3,540,212 - AO353_16015 0.39 +0.4 3,540,212 - AO353_16015 0.39 +0.6 3,540,310 + AO353_16015 0.49 +0.1 3,540,310 + AO353_16015 0.49 +0.3 3,540,403 + AO353_16015 0.59 +0.5 3,540,403 + AO353_16015 0.59 -0.8 3,540,403 + AO353_16015 0.59 -0.7 3,540,403 + AO353_16015 0.59 -1.0 3,540,403 + AO353_16015 0.59 -0.2 3,540,403 + AO353_16015 0.59 -0.2 3,540,403 + AO353_16015 0.59 -0.2 3,540,403 + AO353_16015 0.59 -0.6 3,540,403 + AO353_16015 0.59 +0.3 3,540,403 + AO353_16015 0.59 -0.6 3,540,403 + AO353_16015 0.59 -1.4 3,540,403 + AO353_16015 0.59 -0.3 3,540,403 + AO353_16015 0.59 -0.7 3,540,403 + AO353_16015 0.59 -0.0 3,540,403 + AO353_16015 0.59 +0.9 3,540,403 + AO353_16015 0.59 -1.6 3,540,403 + AO353_16015 0.59 -0.5 3,540,403 + AO353_16015 0.59 -0.4 3,540,403 + AO353_16015 0.59 +0.4 3,540,403 + AO353_16015 0.59 -1.7 3,540,403 + AO353_16015 0.59 +1.4 3,540,404 - AO353_16015 0.59 -1.6 3,540,404 - AO353_16015 0.59 -0.2 3,540,404 - AO353_16015 0.59 -0.6 3,540,404 - AO353_16015 0.59 +0.2 3,540,404 - AO353_16015 0.59 -0.9 3,540,404 - AO353_16015 0.59 -0.5 3,540,404 - AO353_16015 0.59 -0.4 3,540,404 - AO353_16015 0.59 +2.1 3,540,404 - AO353_16015 0.59 -0.3 3,540,404 - AO353_16015 0.59 +0.7 3,540,404 - AO353_16015 0.59 -0.1 3,540,404 - AO353_16015 0.59 +0.2 3,540,404 - AO353_16015 0.59 +0.7 3,540,404 - AO353_16015 0.59 -1.2 3,540,404 - AO353_16015 0.59 -0.3 3,540,404 - AO353_16015 0.59 +0.4 3,540,404 - AO353_16015 0.59 -0.8 3,540,404 - AO353_16015 0.59 +0.5 3,540,407 - AO353_16015 0.59 +0.9 3,540,440 + AO353_16015 0.63 -0.3 3,540,440 + AO353_16015 0.63 -0.7 3,540,441 - AO353_16015 0.63 -2.2
Or see this region's nucleotide sequence