Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14110 and AO353_14115 are separated by 123 nucleotides AO353_14115 and AO353_14120 are separated by 11 nucleotides AO353_14120 and AO353_14125 are separated by 120 nucleotides
AO353_14110: AO353_14110 - GTPase CgtA, at 3,134,515 to 3,135,738
_14110
AO353_14115: AO353_14115 - gamma-glutamyl kinase, at 3,135,862 to 3,136,980
_14115
AO353_14120: AO353_14120 - hypothetical protein, at 3,136,992 to 3,137,456
_14120
AO353_14125: AO353_14125 - 30S ribosomal protein S20, at 3,137,577 to 3,137,855
_14125
Position (kb)
3135
3136
3137 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3135.724 kb on + strand at 3135.724 kb on + strand at 3135.724 kb on + strand at 3135.725 kb on - strand at 3135.725 kb on - strand at 3135.749 kb on + strand at 3135.749 kb on + strand at 3135.750 kb on - strand at 3135.755 kb on + strand at 3135.756 kb on - strand at 3135.785 kb on + strand at 3135.786 kb on - strand at 3135.800 kb on - strand at 3135.809 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.848 kb on + strand at 3135.849 kb on - strand at 3135.849 kb on - strand at 3135.849 kb on - strand at 3136.041 kb on + strand, within AO353_14115 at 3136.041 kb on + strand, within AO353_14115 at 3136.041 kb on + strand, within AO353_14115 at 3136.041 kb on + strand, within AO353_14115 at 3136.042 kb on - strand, within AO353_14115 at 3136.042 kb on - strand, within AO353_14115 at 3136.284 kb on + strand, within AO353_14115 at 3136.439 kb on - strand, within AO353_14115 at 3136.752 kb on + strand, within AO353_14115 at 3136.752 kb on + strand, within AO353_14115 at 3136.752 kb on + strand, within AO353_14115 at 3136.752 kb on + strand, within AO353_14115 at 3136.752 kb on + strand, within AO353_14115 at 3136.752 kb on + strand, within AO353_14115 at 3136.752 kb on + strand, within AO353_14115 at 3136.753 kb on - strand, within AO353_14115 at 3136.753 kb on - strand, within AO353_14115 at 3136.753 kb on - strand, within AO353_14115 at 3136.753 kb on - strand, within AO353_14115 at 3136.864 kb on + strand at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.864 kb on + strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.865 kb on - strand, within AO353_14115 at 3136.930 kb on + strand at 3136.930 kb on + strand at 3136.930 kb on + strand at 3136.930 kb on + strand at 3136.930 kb on + strand at 3136.930 kb on + strand at 3136.930 kb on + strand at 3136.930 kb on + strand at 3136.931 kb on - strand at 3136.931 kb on - strand at 3136.931 kb on - strand at 3136.979 kb on - strand at 3136.979 kb on - strand at 3137.068 kb on + strand, within AO353_14120 at 3137.069 kb on - strand, within AO353_14120 at 3137.069 kb on - strand, within AO353_14120 at 3137.154 kb on + strand, within AO353_14120 at 3137.154 kb on + strand, within AO353_14120 at 3137.154 kb on + strand, within AO353_14120 at 3137.155 kb on - strand, within AO353_14120 at 3137.367 kb on + strand, within AO353_14120 at 3137.367 kb on + strand, within AO353_14120 at 3137.367 kb on + strand, within AO353_14120 at 3137.368 kb on - strand, within AO353_14120 at 3137.368 kb on - strand, within AO353_14120 at 3137.368 kb on - strand, within AO353_14120 at 3137.377 kb on - strand, within AO353_14120 at 3137.377 kb on - strand, within AO353_14120 at 3137.454 kb on + strand at 3137.454 kb on + strand at 3137.534 kb on + strand at 3137.972 kb on - strand at 3137.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 3,135,724 + +0.7 3,135,724 + -0.5 3,135,724 + -2.1 3,135,725 - -1.4 3,135,725 - +0.9 3,135,749 + -2.0 3,135,749 + -0.1 3,135,750 - +1.3 3,135,755 + -0.0 3,135,756 - -0.3 3,135,785 + -0.5 3,135,786 - +0.6 3,135,800 - -2.2 3,135,809 + -0.2 3,135,848 + -0.9 3,135,848 + -0.9 3,135,848 + -0.3 3,135,848 + +1.0 3,135,848 + -2.0 3,135,848 + -1.3 3,135,848 + -0.2 3,135,848 + -1.1 3,135,848 + -1.4 3,135,848 + -2.3 3,135,848 + -0.6 3,135,848 + +0.6 3,135,848 + -1.1 3,135,849 - -1.0 3,135,849 - -1.7 3,135,849 - -0.7 3,136,041 + AO353_14115 0.16 +0.3 3,136,041 + AO353_14115 0.16 -0.9 3,136,041 + AO353_14115 0.16 -0.9 3,136,041 + AO353_14115 0.16 -0.7 3,136,042 - AO353_14115 0.16 -1.1 3,136,042 - AO353_14115 0.16 -0.1 3,136,284 + AO353_14115 0.38 -0.4 3,136,439 - AO353_14115 0.52 -0.1 3,136,752 + AO353_14115 0.80 -2.4 3,136,752 + AO353_14115 0.80 +0.9 3,136,752 + AO353_14115 0.80 -2.0 3,136,752 + AO353_14115 0.80 -0.5 3,136,752 + AO353_14115 0.80 -1.3 3,136,752 + AO353_14115 0.80 +0.4 3,136,752 + AO353_14115 0.80 +0.3 3,136,753 - AO353_14115 0.80 -2.7 3,136,753 - AO353_14115 0.80 +1.3 3,136,753 - AO353_14115 0.80 -0.6 3,136,753 - AO353_14115 0.80 +0.5 3,136,864 + +3.5 3,136,864 + AO353_14115 0.90 -1.6 3,136,864 + AO353_14115 0.90 -1.7 3,136,864 + AO353_14115 0.90 +0.7 3,136,864 + AO353_14115 0.90 +1.3 3,136,864 + AO353_14115 0.90 -1.0 3,136,864 + AO353_14115 0.90 -0.4 3,136,864 + AO353_14115 0.90 -0.0 3,136,864 + AO353_14115 0.90 -0.9 3,136,864 + AO353_14115 0.90 -0.7 3,136,864 + AO353_14115 0.90 +0.6 3,136,864 + AO353_14115 0.90 -1.4 3,136,865 - AO353_14115 0.90 -0.4 3,136,865 - AO353_14115 0.90 -0.1 3,136,865 - AO353_14115 0.90 -0.4 3,136,865 - AO353_14115 0.90 +0.5 3,136,865 - AO353_14115 0.90 -0.3 3,136,865 - AO353_14115 0.90 -1.1 3,136,865 - AO353_14115 0.90 -0.7 3,136,865 - AO353_14115 0.90 -0.2 3,136,865 - AO353_14115 0.90 +1.3 3,136,865 - AO353_14115 0.90 +0.3 3,136,930 + +1.0 3,136,930 + -0.3 3,136,930 + -0.2 3,136,930 + -2.0 3,136,930 + -1.4 3,136,930 + -0.7 3,136,930 + -1.4 3,136,930 + -0.3 3,136,931 - -0.0 3,136,931 - +3.7 3,136,931 - +0.1 3,136,979 - +0.1 3,136,979 - +0.4 3,137,068 + AO353_14120 0.16 +1.9 3,137,069 - AO353_14120 0.17 +0.1 3,137,069 - AO353_14120 0.17 +0.3 3,137,154 + AO353_14120 0.35 -0.1 3,137,154 + AO353_14120 0.35 +0.2 3,137,154 + AO353_14120 0.35 +0.2 3,137,155 - AO353_14120 0.35 -1.2 3,137,367 + AO353_14120 0.81 -1.0 3,137,367 + AO353_14120 0.81 -0.2 3,137,367 + AO353_14120 0.81 +0.0 3,137,368 - AO353_14120 0.81 +0.3 3,137,368 - AO353_14120 0.81 +0.3 3,137,368 - AO353_14120 0.81 +0.2 3,137,377 - AO353_14120 0.83 +0.7 3,137,377 - AO353_14120 0.83 -0.9 3,137,454 + +0.3 3,137,454 + -2.0 3,137,534 + -1.5 3,137,972 - +1.5 3,137,972 - -2.5
Or see this region's nucleotide sequence