Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08375

Experiment: A22 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_08365 and AO353_08370 are separated by 132 nucleotidesAO353_08370 and AO353_08375 are separated by 85 nucleotidesAO353_08375 and AO353_08380 overlap by 8 nucleotides AO353_08365: AO353_08365 - L-cystine transporter tcyP, at 1,839,326 to 1,840,717 _08365 AO353_08370: AO353_08370 - diacylglycerol kinase, at 1,840,850 to 1,841,362 _08370 AO353_08375: AO353_08375 - hypothetical protein, at 1,841,448 to 1,842,827 _08375 AO353_08380: AO353_08380 - GTPase SAR1, at 1,842,820 to 1,844,202 _08380 Position (kb) 1841 1842 1843Strain fitness (log2 ratio) -2 -1 0 1 2at 1840.643 kb on - strandat 1840.715 kb on + strandat 1840.715 kb on + strandat 1840.715 kb on + strandat 1840.716 kb on - strandat 1840.716 kb on - strandat 1840.716 kb on - strandat 1840.725 kb on - strandat 1840.725 kb on - strandat 1840.734 kb on + strandat 1840.734 kb on + strandat 1840.735 kb on - strandat 1840.735 kb on - strandat 1840.735 kb on - strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.788 kb on + strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.789 kb on - strandat 1840.810 kb on + strandat 1840.811 kb on - strandat 1840.811 kb on - strandat 1840.811 kb on - strandat 1840.851 kb on + strandat 1840.851 kb on + strandat 1840.851 kb on + strandat 1840.852 kb on - strandat 1841.375 kb on - strandat 1841.413 kb on + strandat 1841.683 kb on + strand, within AO353_08375at 1841.821 kb on + strand, within AO353_08375at 1841.822 kb on - strand, within AO353_08375at 1841.822 kb on - strand, within AO353_08375at 1841.835 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.857 kb on + strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1841.858 kb on - strand, within AO353_08375at 1842.243 kb on + strand, within AO353_08375at 1842.243 kb on + strand, within AO353_08375at 1842.339 kb on + strand, within AO353_08375at 1842.893 kb on + strandat 1842.893 kb on + strandat 1842.894 kb on - strandat 1842.894 kb on - strandat 1843.006 kb on + strand, within AO353_08380at 1843.048 kb on + strand, within AO353_08380at 1843.049 kb on - strand, within AO353_08380at 1843.157 kb on + strand, within AO353_08380at 1843.157 kb on + strand, within AO353_08380at 1843.157 kb on + strand, within AO353_08380at 1843.158 kb on - strand, within AO353_08380at 1843.158 kb on - strand, within AO353_08380at 1843.192 kb on + strand, within AO353_08380at 1843.192 kb on + strand, within AO353_08380at 1843.192 kb on + strand, within AO353_08380at 1843.192 kb on + strand, within AO353_08380at 1843.192 kb on + strand, within AO353_08380at 1843.192 kb on + strand, within AO353_08380at 1843.193 kb on - strand, within AO353_08380at 1843.228 kb on + strand, within AO353_08380at 1843.408 kb on + strand, within AO353_08380at 1843.408 kb on + strand, within AO353_08380at 1843.409 kb on - strand, within AO353_08380at 1843.658 kb on - strand, within AO353_08380at 1843.658 kb on - strand, within AO353_08380at 1843.821 kb on - strand, within AO353_08380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
remove
1,840,643 - +0.9
1,840,715 + +0.2
1,840,715 + -0.6
1,840,715 + +0.1
1,840,716 - +0.5
1,840,716 - +0.4
1,840,716 - +0.7
1,840,725 - +0.6
1,840,725 - +0.2
1,840,734 + +1.9
1,840,734 + +0.3
1,840,735 - +1.1
1,840,735 - +0.5
1,840,735 - -1.6
1,840,788 + +0.1
1,840,788 + +1.1
1,840,788 + -1.3
1,840,788 + +0.0
1,840,788 + -0.2
1,840,788 + -0.7
1,840,788 + -1.7
1,840,788 + -0.9
1,840,788 + -1.1
1,840,788 + -0.1
1,840,789 - +0.6
1,840,789 - +0.1
1,840,789 - +1.6
1,840,789 - +0.2
1,840,789 - +1.2
1,840,789 - -0.1
1,840,789 - -0.9
1,840,789 - -1.3
1,840,789 - -0.1
1,840,810 + +1.0
1,840,811 - -0.7
1,840,811 - +0.6
1,840,811 - -0.9
1,840,851 + +1.6
1,840,851 + +0.2
1,840,851 + -0.9
1,840,852 - +0.5
1,841,375 - +1.1
1,841,413 + +0.5
1,841,683 + AO353_08375 0.17 -1.5
1,841,821 + AO353_08375 0.27 -1.8
1,841,822 - AO353_08375 0.27 -0.7
1,841,822 - AO353_08375 0.27 +0.7
1,841,835 + AO353_08375 0.28 -0.4
1,841,857 + AO353_08375 0.30 -0.7
1,841,857 + AO353_08375 0.30 -0.9
1,841,857 + AO353_08375 0.30 -0.5
1,841,857 + AO353_08375 0.30 +0.3
1,841,857 + AO353_08375 0.30 -0.5
1,841,857 + AO353_08375 0.30 +0.3
1,841,857 + AO353_08375 0.30 -0.9
1,841,857 + AO353_08375 0.30 -0.7
1,841,857 + AO353_08375 0.30 -0.6
1,841,858 - AO353_08375 0.30 -0.5
1,841,858 - AO353_08375 0.30 -1.2
1,841,858 - AO353_08375 0.30 -0.2
1,841,858 - AO353_08375 0.30 +0.8
1,841,858 - AO353_08375 0.30 -1.2
1,842,243 + AO353_08375 0.58 -1.3
1,842,243 + AO353_08375 0.58 -0.5
1,842,339 + AO353_08375 0.65 +1.8
1,842,893 + -2.1
1,842,893 + +0.1
1,842,894 - -0.9
1,842,894 - +0.7
1,843,006 + AO353_08380 0.13 -0.9
1,843,048 + AO353_08380 0.16 +0.5
1,843,049 - AO353_08380 0.17 -0.3
1,843,157 + AO353_08380 0.24 -0.5
1,843,157 + AO353_08380 0.24 +0.5
1,843,157 + AO353_08380 0.24 +1.4
1,843,158 - AO353_08380 0.24 +0.2
1,843,158 - AO353_08380 0.24 +0.3
1,843,192 + AO353_08380 0.27 +0.6
1,843,192 + AO353_08380 0.27 -1.2
1,843,192 + AO353_08380 0.27 +0.2
1,843,192 + AO353_08380 0.27 +0.1
1,843,192 + AO353_08380 0.27 +2.6
1,843,192 + AO353_08380 0.27 -1.3
1,843,193 - AO353_08380 0.27 -0.0
1,843,228 + AO353_08380 0.30 -0.3
1,843,408 + AO353_08380 0.43 -1.4
1,843,408 + AO353_08380 0.43 -0.7
1,843,409 - AO353_08380 0.43 +0.1
1,843,658 - AO353_08380 0.61 -0.7
1,843,658 - AO353_08380 0.61 -0.1
1,843,821 - AO353_08380 0.72 -0.3

Or see this region's nucleotide sequence