Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_08365 and AO353_08370 are separated by 132 nucleotides AO353_08370 and AO353_08375 are separated by 85 nucleotides AO353_08375 and AO353_08380 overlap by 8 nucleotides
AO353_08365: AO353_08365 - L-cystine transporter tcyP, at 1,839,326 to 1,840,717
_08365
AO353_08370: AO353_08370 - diacylglycerol kinase, at 1,840,850 to 1,841,362
_08370
AO353_08375: AO353_08375 - hypothetical protein, at 1,841,448 to 1,842,827
_08375
AO353_08380: AO353_08380 - GTPase SAR1, at 1,842,820 to 1,844,202
_08380
Position (kb)
1841
1842
1843 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1840.643 kb on - strand at 1840.715 kb on + strand at 1840.715 kb on + strand at 1840.715 kb on + strand at 1840.716 kb on - strand at 1840.716 kb on - strand at 1840.716 kb on - strand at 1840.725 kb on - strand at 1840.725 kb on - strand at 1840.734 kb on + strand at 1840.734 kb on + strand at 1840.735 kb on - strand at 1840.735 kb on - strand at 1840.735 kb on - strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.788 kb on + strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.789 kb on - strand at 1840.810 kb on + strand at 1840.811 kb on - strand at 1840.811 kb on - strand at 1840.811 kb on - strand at 1840.851 kb on + strand at 1840.851 kb on + strand at 1840.851 kb on + strand at 1840.852 kb on - strand at 1841.375 kb on - strand at 1841.413 kb on + strand at 1841.683 kb on + strand, within AO353_08375 at 1841.821 kb on + strand, within AO353_08375 at 1841.822 kb on - strand, within AO353_08375 at 1841.822 kb on - strand, within AO353_08375 at 1841.835 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.857 kb on + strand, within AO353_08375 at 1841.858 kb on - strand, within AO353_08375 at 1841.858 kb on - strand, within AO353_08375 at 1841.858 kb on - strand, within AO353_08375 at 1841.858 kb on - strand, within AO353_08375 at 1841.858 kb on - strand, within AO353_08375 at 1842.243 kb on + strand, within AO353_08375 at 1842.243 kb on + strand, within AO353_08375 at 1842.339 kb on + strand, within AO353_08375 at 1842.893 kb on + strand at 1842.893 kb on + strand at 1842.894 kb on - strand at 1842.894 kb on - strand at 1843.006 kb on + strand, within AO353_08380 at 1843.048 kb on + strand, within AO353_08380 at 1843.049 kb on - strand, within AO353_08380 at 1843.157 kb on + strand, within AO353_08380 at 1843.157 kb on + strand, within AO353_08380 at 1843.157 kb on + strand, within AO353_08380 at 1843.158 kb on - strand, within AO353_08380 at 1843.158 kb on - strand, within AO353_08380 at 1843.192 kb on + strand, within AO353_08380 at 1843.192 kb on + strand, within AO353_08380 at 1843.192 kb on + strand, within AO353_08380 at 1843.192 kb on + strand, within AO353_08380 at 1843.192 kb on + strand, within AO353_08380 at 1843.192 kb on + strand, within AO353_08380 at 1843.193 kb on - strand, within AO353_08380 at 1843.228 kb on + strand, within AO353_08380 at 1843.408 kb on + strand, within AO353_08380 at 1843.408 kb on + strand, within AO353_08380 at 1843.409 kb on - strand, within AO353_08380 at 1843.658 kb on - strand, within AO353_08380 at 1843.658 kb on - strand, within AO353_08380 at 1843.821 kb on - strand, within AO353_08380
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 1,840,643 - +0.9 1,840,715 + +0.2 1,840,715 + -0.6 1,840,715 + +0.1 1,840,716 - +0.5 1,840,716 - +0.4 1,840,716 - +0.7 1,840,725 - +0.6 1,840,725 - +0.2 1,840,734 + +1.9 1,840,734 + +0.3 1,840,735 - +1.1 1,840,735 - +0.5 1,840,735 - -1.6 1,840,788 + +0.1 1,840,788 + +1.1 1,840,788 + -1.3 1,840,788 + +0.0 1,840,788 + -0.2 1,840,788 + -0.7 1,840,788 + -1.7 1,840,788 + -0.9 1,840,788 + -1.1 1,840,788 + -0.1 1,840,789 - +0.6 1,840,789 - +0.1 1,840,789 - +1.6 1,840,789 - +0.2 1,840,789 - +1.2 1,840,789 - -0.1 1,840,789 - -0.9 1,840,789 - -1.3 1,840,789 - -0.1 1,840,810 + +1.0 1,840,811 - -0.7 1,840,811 - +0.6 1,840,811 - -0.9 1,840,851 + +1.6 1,840,851 + +0.2 1,840,851 + -0.9 1,840,852 - +0.5 1,841,375 - +1.1 1,841,413 + +0.5 1,841,683 + AO353_08375 0.17 -1.5 1,841,821 + AO353_08375 0.27 -1.8 1,841,822 - AO353_08375 0.27 -0.7 1,841,822 - AO353_08375 0.27 +0.7 1,841,835 + AO353_08375 0.28 -0.4 1,841,857 + AO353_08375 0.30 -0.7 1,841,857 + AO353_08375 0.30 -0.9 1,841,857 + AO353_08375 0.30 -0.5 1,841,857 + AO353_08375 0.30 +0.3 1,841,857 + AO353_08375 0.30 -0.5 1,841,857 + AO353_08375 0.30 +0.3 1,841,857 + AO353_08375 0.30 -0.9 1,841,857 + AO353_08375 0.30 -0.7 1,841,857 + AO353_08375 0.30 -0.6 1,841,858 - AO353_08375 0.30 -0.5 1,841,858 - AO353_08375 0.30 -1.2 1,841,858 - AO353_08375 0.30 -0.2 1,841,858 - AO353_08375 0.30 +0.8 1,841,858 - AO353_08375 0.30 -1.2 1,842,243 + AO353_08375 0.58 -1.3 1,842,243 + AO353_08375 0.58 -0.5 1,842,339 + AO353_08375 0.65 +1.8 1,842,893 + -2.1 1,842,893 + +0.1 1,842,894 - -0.9 1,842,894 - +0.7 1,843,006 + AO353_08380 0.13 -0.9 1,843,048 + AO353_08380 0.16 +0.5 1,843,049 - AO353_08380 0.17 -0.3 1,843,157 + AO353_08380 0.24 -0.5 1,843,157 + AO353_08380 0.24 +0.5 1,843,157 + AO353_08380 0.24 +1.4 1,843,158 - AO353_08380 0.24 +0.2 1,843,158 - AO353_08380 0.24 +0.3 1,843,192 + AO353_08380 0.27 +0.6 1,843,192 + AO353_08380 0.27 -1.2 1,843,192 + AO353_08380 0.27 +0.2 1,843,192 + AO353_08380 0.27 +0.1 1,843,192 + AO353_08380 0.27 +2.6 1,843,192 + AO353_08380 0.27 -1.3 1,843,193 - AO353_08380 0.27 -0.0 1,843,228 + AO353_08380 0.30 -0.3 1,843,408 + AO353_08380 0.43 -1.4 1,843,408 + AO353_08380 0.43 -0.7 1,843,409 - AO353_08380 0.43 +0.1 1,843,658 - AO353_08380 0.61 -0.7 1,843,658 - AO353_08380 0.61 -0.1 1,843,821 - AO353_08380 0.72 -0.3
Or see this region's nucleotide sequence