Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06810

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06800 and AO353_06805 are separated by 197 nucleotidesAO353_06805 and AO353_06810 are separated by 19 nucleotidesAO353_06810 and AO353_06815 are separated by 69 nucleotidesAO353_06815 and AO353_06820 are separated by 73 nucleotidesAO353_06820 and AO353_06825 overlap by 14 nucleotides AO353_06800: AO353_06800 - hypothetical protein, at 1,513,181 to 1,514,680 _06800 AO353_06805: AO353_06805 - hypothetical protein, at 1,514,878 to 1,515,555 _06805 AO353_06810: AO353_06810 - phage shock protein A, at 1,515,575 to 1,516,276 _06810 AO353_06815: AO353_06815 - protease, at 1,516,346 to 1,516,909 _06815 AO353_06820: AO353_06820 - hypothetical protein, at 1,516,983 to 1,517,195 _06820 AO353_06825: AO353_06825 - hypothetical protein, at 1,517,182 to 1,517,832 _06825 Position (kb) 1515 1516 1517Strain fitness (log2 ratio) -2 -1 0 1 2at 1514.605 kb on - strandat 1514.630 kb on + strandat 1514.630 kb on + strandat 1514.630 kb on + strandat 1514.630 kb on + strandat 1514.630 kb on + strandat 1514.630 kb on + strandat 1514.631 kb on - strandat 1514.631 kb on - strandat 1514.631 kb on - strandat 1514.631 kb on - strandat 1514.634 kb on + strandat 1514.634 kb on + strandat 1514.634 kb on + strandat 1514.635 kb on - strandat 1514.635 kb on - strandat 1514.635 kb on - strandat 1514.635 kb on - strandat 1514.678 kb on + strandat 1514.678 kb on + strandat 1514.830 kb on - strandat 1514.835 kb on + strandat 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.971 kb on + strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.972 kb on - strand, within AO353_06805at 1514.973 kb on + strand, within AO353_06805at 1514.973 kb on + strand, within AO353_06805at 1514.973 kb on + strand, within AO353_06805at 1514.974 kb on - strand, within AO353_06805at 1514.974 kb on - strand, within AO353_06805at 1514.974 kb on - strand, within AO353_06805at 1515.010 kb on + strand, within AO353_06805at 1515.010 kb on + strand, within AO353_06805at 1515.010 kb on + strand, within AO353_06805at 1515.077 kb on + strand, within AO353_06805at 1515.077 kb on + strand, within AO353_06805at 1515.077 kb on + strand, within AO353_06805at 1515.078 kb on - strand, within AO353_06805at 1515.078 kb on - strand, within AO353_06805at 1515.078 kb on - strand, within AO353_06805at 1515.118 kb on + strand, within AO353_06805at 1515.118 kb on + strand, within AO353_06805at 1515.118 kb on + strand, within AO353_06805at 1515.118 kb on + strand, within AO353_06805at 1515.118 kb on + strand, within AO353_06805at 1515.118 kb on + strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.119 kb on - strand, within AO353_06805at 1515.132 kb on + strand, within AO353_06805at 1515.133 kb on - strand, within AO353_06805at 1515.133 kb on - strand, within AO353_06805at 1515.274 kb on + strand, within AO353_06805at 1515.274 kb on + strand, within AO353_06805at 1515.274 kb on + strand, within AO353_06805at 1515.275 kb on - strand, within AO353_06805at 1515.275 kb on - strand, within AO353_06805at 1515.275 kb on - strand, within AO353_06805at 1515.275 kb on - strand, within AO353_06805at 1515.436 kb on + strand, within AO353_06805at 1515.436 kb on + strand, within AO353_06805at 1515.436 kb on + strand, within AO353_06805at 1515.436 kb on + strand, within AO353_06805at 1515.436 kb on + strand, within AO353_06805at 1515.436 kb on + strand, within AO353_06805at 1515.436 kb on + strand, within AO353_06805at 1515.437 kb on - strand, within AO353_06805at 1515.437 kb on - strand, within AO353_06805at 1515.779 kb on + strand, within AO353_06810at 1515.779 kb on + strand, within AO353_06810at 1515.779 kb on + strand, within AO353_06810at 1515.779 kb on + strand, within AO353_06810at 1515.779 kb on + strand, within AO353_06810at 1515.780 kb on - strand, within AO353_06810at 1515.780 kb on - strand, within AO353_06810at 1515.780 kb on - strand, within AO353_06810at 1515.780 kb on - strand, within AO353_06810at 1515.780 kb on - strand, within AO353_06810at 1515.780 kb on - strand, within AO353_06810at 1515.929 kb on + strand, within AO353_06810at 1516.023 kb on + strand, within AO353_06810at 1516.023 kb on + strand, within AO353_06810at 1516.024 kb on - strand, within AO353_06810at 1516.486 kb on + strand, within AO353_06815at 1516.487 kb on - strand, within AO353_06815at 1516.487 kb on - strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.509 kb on + strand, within AO353_06815at 1516.510 kb on - strand, within AO353_06815at 1516.510 kb on - strand, within AO353_06815at 1516.510 kb on - strand, within AO353_06815at 1516.510 kb on - strand, within AO353_06815at 1516.510 kb on - strand, within AO353_06815at 1516.510 kb on - strand, within AO353_06815at 1516.510 kb on - strand, within AO353_06815at 1516.701 kb on - strand, within AO353_06815at 1516.701 kb on - strand, within AO353_06815at 1516.701 kb on - strand, within AO353_06815at 1516.773 kb on - strand, within AO353_06815at 1516.796 kb on - strand, within AO353_06815at 1516.796 kb on - strand, within AO353_06815at 1516.829 kb on - strand, within AO353_06815at 1516.829 kb on - strand, within AO353_06815at 1516.852 kb on + strand, within AO353_06815at 1516.852 kb on + strand, within AO353_06815at 1516.852 kb on + strandat 1516.852 kb on + strand, within AO353_06815at 1516.853 kb on - strandat 1516.853 kb on - strandat 1516.853 kb on - strandat 1516.853 kb on - strandat 1516.866 kb on + strandat 1516.866 kb on + strandat 1516.894 kb on + strandat 1516.894 kb on + strandat 1516.894 kb on + strandat 1516.894 kb on + strandat 1516.894 kb on + strandat 1516.895 kb on - strandat 1516.895 kb on - strandat 1516.895 kb on - strandat 1516.895 kb on - strandat 1516.895 kb on - strandat 1516.895 kb on - strandat 1516.907 kb on + strandat 1516.944 kb on - strandat 1516.944 kb on - strandat 1517.002 kb on + strandat 1517.002 kb on + strandat 1517.003 kb on - strandat 1517.003 kb on - strandat 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.010 kb on + strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.011 kb on - strand, within AO353_06820at 1517.068 kb on + strand, within AO353_06820at 1517.110 kb on + strand, within AO353_06820at 1517.110 kb on + strand, within AO353_06820at 1517.111 kb on - strand, within AO353_06820at 1517.134 kb on + strand, within AO353_06820at 1517.134 kb on + strand, within AO353_06820at 1517.135 kb on - strand, within AO353_06820at 1517.168 kb on - strand, within AO353_06820

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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1,514,605 - -0.4
1,514,630 + +1.2
1,514,630 + -0.1
1,514,630 + +0.8
1,514,630 + +1.1
1,514,630 + -0.4
1,514,630 + -0.2
1,514,631 - +0.5
1,514,631 - -0.4
1,514,631 - -0.5
1,514,631 - +0.4
1,514,634 + +0.9
1,514,634 + -0.9
1,514,634 + +1.4
1,514,635 - +0.6
1,514,635 - +0.9
1,514,635 - -0.1
1,514,635 - -0.5
1,514,678 + -0.6
1,514,678 + -0.3
1,514,830 - +0.1
1,514,835 + +1.5
1,514,971 + AO353_06805 0.14 -0.9
1,514,971 + AO353_06805 0.14 -0.1
1,514,971 + AO353_06805 0.14 -0.9
1,514,971 + AO353_06805 0.14 -0.0
1,514,971 + AO353_06805 0.14 +0.9
1,514,971 + AO353_06805 0.14 +0.2
1,514,971 + AO353_06805 0.14 -2.5
1,514,971 + AO353_06805 0.14 -1.4
1,514,971 + AO353_06805 0.14 +1.4
1,514,971 + AO353_06805 0.14 -0.5
1,514,971 + AO353_06805 0.14 -0.4
1,514,971 + AO353_06805 0.14 +1.1
1,514,971 + AO353_06805 0.14 +0.1
1,514,971 + AO353_06805 0.14 +1.2
1,514,971 + AO353_06805 0.14 -1.1
1,514,971 + AO353_06805 0.14 -2.2
1,514,972 - AO353_06805 0.14 +0.1
1,514,972 - AO353_06805 0.14 -1.8
1,514,972 - AO353_06805 0.14 +0.2
1,514,972 - AO353_06805 0.14 -1.2
1,514,972 - AO353_06805 0.14 +1.4
1,514,972 - AO353_06805 0.14 -0.8
1,514,972 - AO353_06805 0.14 +0.1
1,514,972 - AO353_06805 0.14 -0.1
1,514,972 - AO353_06805 0.14 -0.3
1,514,972 - AO353_06805 0.14 -0.9
1,514,972 - AO353_06805 0.14 +0.6
1,514,972 - AO353_06805 0.14 -0.2
1,514,972 - AO353_06805 0.14 +0.2
1,514,972 - AO353_06805 0.14 -0.6
1,514,973 + AO353_06805 0.14 -1.1
1,514,973 + AO353_06805 0.14 -0.8
1,514,973 + AO353_06805 0.14 -0.1
1,514,974 - AO353_06805 0.14 -2.2
1,514,974 - AO353_06805 0.14 +0.3
1,514,974 - AO353_06805 0.14 +1.5
1,515,010 + AO353_06805 0.19 +0.8
1,515,010 + AO353_06805 0.19 -0.5
1,515,010 + AO353_06805 0.19 -0.4
1,515,077 + AO353_06805 0.29 +0.4
1,515,077 + AO353_06805 0.29 -1.2
1,515,077 + AO353_06805 0.29 +0.6
1,515,078 - AO353_06805 0.29 +0.6
1,515,078 - AO353_06805 0.29 +0.9
1,515,078 - AO353_06805 0.29 -0.2
1,515,118 + AO353_06805 0.35 -0.9
1,515,118 + AO353_06805 0.35 -0.3
1,515,118 + AO353_06805 0.35 +0.4
1,515,118 + AO353_06805 0.35 -1.2
1,515,118 + AO353_06805 0.35 -0.2
1,515,118 + AO353_06805 0.35 +0.4
1,515,119 - AO353_06805 0.36 +0.8
1,515,119 - AO353_06805 0.36 -0.1
1,515,119 - AO353_06805 0.36 +0.3
1,515,119 - AO353_06805 0.36 +0.1
1,515,119 - AO353_06805 0.36 +0.2
1,515,119 - AO353_06805 0.36 -0.7
1,515,119 - AO353_06805 0.36 +1.5
1,515,119 - AO353_06805 0.36 -0.8
1,515,119 - AO353_06805 0.36 +1.0
1,515,119 - AO353_06805 0.36 -0.1
1,515,119 - AO353_06805 0.36 +1.5
1,515,132 + AO353_06805 0.37 -0.1
1,515,133 - AO353_06805 0.38 +0.6
1,515,133 - AO353_06805 0.38 +0.6
1,515,274 + AO353_06805 0.58 +1.2
1,515,274 + AO353_06805 0.58 +0.7
1,515,274 + AO353_06805 0.58 -0.9
1,515,275 - AO353_06805 0.59 -1.4
1,515,275 - AO353_06805 0.59 +0.7
1,515,275 - AO353_06805 0.59 -0.1
1,515,275 - AO353_06805 0.59 -1.1
1,515,436 + AO353_06805 0.82 +0.6
1,515,436 + AO353_06805 0.82 +0.3
1,515,436 + AO353_06805 0.82 -0.6
1,515,436 + AO353_06805 0.82 -0.6
1,515,436 + AO353_06805 0.82 -0.2
1,515,436 + AO353_06805 0.82 +0.5
1,515,436 + AO353_06805 0.82 -2.3
1,515,437 - AO353_06805 0.82 +2.2
1,515,437 - AO353_06805 0.82 -0.5
1,515,779 + AO353_06810 0.29 -0.8
1,515,779 + AO353_06810 0.29 -1.7
1,515,779 + AO353_06810 0.29 +0.1
1,515,779 + AO353_06810 0.29 -0.4
1,515,779 + AO353_06810 0.29 -1.2
1,515,780 - AO353_06810 0.29 -0.7
1,515,780 - AO353_06810 0.29 -1.4
1,515,780 - AO353_06810 0.29 -1.2
1,515,780 - AO353_06810 0.29 +1.1
1,515,780 - AO353_06810 0.29 -0.3
1,515,780 - AO353_06810 0.29 -0.9
1,515,929 + AO353_06810 0.50 -0.7
1,516,023 + AO353_06810 0.64 +0.3
1,516,023 + AO353_06810 0.64 -0.7
1,516,024 - AO353_06810 0.64 -0.2
1,516,486 + AO353_06815 0.25 -0.5
1,516,487 - AO353_06815 0.25 +0.1
1,516,487 - AO353_06815 0.25 -0.1
1,516,509 + AO353_06815 0.29 -0.4
1,516,509 + AO353_06815 0.29 +0.3
1,516,509 + AO353_06815 0.29 +0.4
1,516,509 + AO353_06815 0.29 -1.5
1,516,509 + AO353_06815 0.29 -1.7
1,516,509 + AO353_06815 0.29 +0.9
1,516,509 + AO353_06815 0.29 +0.6
1,516,509 + AO353_06815 0.29 +0.3
1,516,509 + AO353_06815 0.29 -0.2
1,516,509 + AO353_06815 0.29 -0.1
1,516,509 + AO353_06815 0.29 -1.2
1,516,509 + AO353_06815 0.29 +0.5
1,516,509 + AO353_06815 0.29 -1.1
1,516,509 + AO353_06815 0.29 +0.4
1,516,509 + AO353_06815 0.29 -0.1
1,516,510 - AO353_06815 0.29 +1.3
1,516,510 - AO353_06815 0.29 -0.1
1,516,510 - AO353_06815 0.29 -0.3
1,516,510 - AO353_06815 0.29 -0.5
1,516,510 - AO353_06815 0.29 -0.6
1,516,510 - AO353_06815 0.29 +0.0
1,516,510 - AO353_06815 0.29 -1.1
1,516,701 - AO353_06815 0.63 -0.5
1,516,701 - AO353_06815 0.63 -0.4
1,516,701 - AO353_06815 0.63 -1.7
1,516,773 - AO353_06815 0.76 -0.5
1,516,796 - AO353_06815 0.80 -2.2
1,516,796 - AO353_06815 0.80 -0.2
1,516,829 - AO353_06815 0.86 +0.3
1,516,829 - AO353_06815 0.86 +1.0
1,516,852 + AO353_06815 0.90 +0.9
1,516,852 + AO353_06815 0.90 +1.6
1,516,852 + +1.3
1,516,852 + AO353_06815 0.90 +0.2
1,516,853 - +0.8
1,516,853 - -1.9
1,516,853 - +1.6
1,516,853 - +0.1
1,516,866 + -0.7
1,516,866 + -0.9
1,516,894 + +0.5
1,516,894 + -1.9
1,516,894 + +0.1
1,516,894 + +1.2
1,516,894 + +0.5
1,516,895 - -1.2
1,516,895 - -1.2
1,516,895 - -0.2
1,516,895 - +1.2
1,516,895 - -0.3
1,516,895 - -0.7
1,516,907 + -0.4
1,516,944 - -0.9
1,516,944 - -1.2
1,517,002 + -0.4
1,517,002 + +0.3
1,517,003 - +0.3
1,517,003 - +0.9
1,517,010 + AO353_06820 0.13 +0.1
1,517,010 + AO353_06820 0.13 +0.1
1,517,010 + AO353_06820 0.13 -0.1
1,517,010 + AO353_06820 0.13 -1.2
1,517,010 + AO353_06820 0.13 -0.9
1,517,010 + AO353_06820 0.13 +1.4
1,517,010 + AO353_06820 0.13 +1.5
1,517,010 + AO353_06820 0.13 +0.3
1,517,010 + AO353_06820 0.13 +1.4
1,517,011 - AO353_06820 0.13 -0.4
1,517,011 - AO353_06820 0.13 -1.4
1,517,011 - AO353_06820 0.13 -1.0
1,517,011 - AO353_06820 0.13 -0.4
1,517,011 - AO353_06820 0.13 +0.3
1,517,011 - AO353_06820 0.13 +0.4
1,517,011 - AO353_06820 0.13 -1.1
1,517,011 - AO353_06820 0.13 +1.3
1,517,011 - AO353_06820 0.13 -0.3
1,517,011 - AO353_06820 0.13 +1.6
1,517,011 - AO353_06820 0.13 +0.9
1,517,011 - AO353_06820 0.13 +2.5
1,517,068 + AO353_06820 0.40 +0.7
1,517,110 + AO353_06820 0.60 +1.3
1,517,110 + AO353_06820 0.60 +0.2
1,517,111 - AO353_06820 0.60 +0.4
1,517,134 + AO353_06820 0.71 +0.9
1,517,134 + AO353_06820 0.71 -1.1
1,517,135 - AO353_06820 0.71 -0.4
1,517,168 - AO353_06820 0.87 +1.1

Or see this region's nucleotide sequence