Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05510

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05505 and AO353_05510 overlap by 4 nucleotidesAO353_05510 and AO353_05515 are separated by 89 nucleotides AO353_05505: AO353_05505 - hypothetical protein, at 1,219,967 to 1,220,803 _05505 AO353_05510: AO353_05510 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,220,800 to 1,221,360 _05510 AO353_05515: AO353_05515 - thymidine phosphorylase, at 1,221,450 to 1,222,538 _05515 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1219.853 kb on + strandat 1219.864 kb on + strandat 1219.864 kb on + strandat 1219.865 kb on - strandat 1219.865 kb on - strandat 1219.901 kb on - strandat 1219.901 kb on - strandat 1220.001 kb on + strandat 1220.002 kb on - strandat 1220.135 kb on - strand, within AO353_05505at 1220.135 kb on - strand, within AO353_05505at 1220.314 kb on - strand, within AO353_05505at 1220.347 kb on - strand, within AO353_05505at 1220.376 kb on + strand, within AO353_05505at 1220.376 kb on + strand, within AO353_05505at 1220.377 kb on - strand, within AO353_05505at 1220.377 kb on - strand, within AO353_05505at 1220.377 kb on - strand, within AO353_05505at 1220.441 kb on - strand, within AO353_05505at 1220.547 kb on + strand, within AO353_05505at 1220.547 kb on + strand, within AO353_05505at 1220.547 kb on + strand, within AO353_05505at 1220.590 kb on - strand, within AO353_05505at 1220.607 kb on - strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.700 kb on + strand, within AO353_05505at 1220.701 kb on - strand, within AO353_05505at 1220.701 kb on - strand, within AO353_05505at 1220.786 kb on + strandat 1220.787 kb on - strandat 1220.787 kb on - strandat 1220.893 kb on - strand, within AO353_05510at 1220.893 kb on - strand, within AO353_05510at 1220.904 kb on + strand, within AO353_05510at 1220.905 kb on - strand, within AO353_05510at 1220.905 kb on - strand, within AO353_05510at 1220.925 kb on + strand, within AO353_05510at 1220.926 kb on - strand, within AO353_05510at 1220.926 kb on - strand, within AO353_05510at 1220.931 kb on + strand, within AO353_05510at 1220.931 kb on + strand, within AO353_05510at 1220.931 kb on + strand, within AO353_05510at 1220.932 kb on - strand, within AO353_05510at 1220.932 kb on - strand, within AO353_05510at 1220.932 kb on - strand, within AO353_05510at 1220.932 kb on - strand, within AO353_05510at 1220.969 kb on + strand, within AO353_05510at 1220.969 kb on + strand, within AO353_05510at 1220.970 kb on - strand, within AO353_05510at 1221.033 kb on + strand, within AO353_05510at 1221.170 kb on + strand, within AO353_05510at 1221.171 kb on - strand, within AO353_05510at 1221.171 kb on - strand, within AO353_05510at 1221.171 kb on - strand, within AO353_05510at 1221.252 kb on + strand, within AO353_05510at 1221.262 kb on + strand, within AO353_05510at 1221.263 kb on - strand, within AO353_05510at 1221.263 kb on - strand, within AO353_05510at 1221.360 kb on + strandat 1221.360 kb on + strandat 1221.360 kb on + strandat 1221.360 kb on + strandat 1221.360 kb on + strandat 1221.361 kb on - strandat 1221.361 kb on - strandat 1221.361 kb on - strandat 1221.361 kb on - strandat 1221.397 kb on + strandat 1221.397 kb on + strandat 1221.397 kb on + strandat 1221.398 kb on - strandat 1221.398 kb on - strandat 1221.607 kb on + strand, within AO353_05515at 1221.607 kb on + strand, within AO353_05515at 1221.607 kb on + strand, within AO353_05515at 1221.607 kb on + strand, within AO353_05515at 1221.607 kb on + strand, within AO353_05515at 1221.607 kb on + strand, within AO353_05515at 1221.607 kb on + strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.608 kb on - strand, within AO353_05515at 1221.752 kb on + strand, within AO353_05515at 1221.753 kb on - strand, within AO353_05515at 1221.753 kb on - strand, within AO353_05515at 1221.753 kb on - strand, within AO353_05515at 1221.753 kb on - strand, within AO353_05515at 1221.901 kb on + strand, within AO353_05515at 1221.901 kb on + strand, within AO353_05515at 1221.901 kb on + strand, within AO353_05515at 1221.901 kb on + strand, within AO353_05515at 1221.902 kb on - strand, within AO353_05515at 1221.902 kb on - strand, within AO353_05515at 1221.902 kb on - strand, within AO353_05515at 1221.902 kb on - strand, within AO353_05515at 1221.902 kb on - strand, within AO353_05515at 1221.902 kb on - strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.928 kb on + strand, within AO353_05515at 1221.929 kb on - strand, within AO353_05515at 1221.929 kb on - strand, within AO353_05515at 1221.929 kb on - strand, within AO353_05515at 1221.929 kb on - strand, within AO353_05515at 1221.929 kb on - strand, within AO353_05515at 1221.929 kb on - strand, within AO353_05515at 1222.003 kb on + strand, within AO353_05515at 1222.165 kb on + strand, within AO353_05515at 1222.228 kb on + strand, within AO353_05515at 1222.229 kb on - strand, within AO353_05515

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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1,219,853 + +1.1
1,219,864 + -0.7
1,219,864 + +1.5
1,219,865 - +1.2
1,219,865 - -1.7
1,219,901 - -0.7
1,219,901 - +0.4
1,220,001 + -0.2
1,220,002 - -1.1
1,220,135 - AO353_05505 0.20 -0.4
1,220,135 - AO353_05505 0.20 -0.0
1,220,314 - AO353_05505 0.41 +0.4
1,220,347 - AO353_05505 0.45 -1.1
1,220,376 + AO353_05505 0.49 -0.1
1,220,376 + AO353_05505 0.49 -0.1
1,220,377 - AO353_05505 0.49 -1.1
1,220,377 - AO353_05505 0.49 -0.9
1,220,377 - AO353_05505 0.49 +0.2
1,220,441 - AO353_05505 0.57 +0.4
1,220,547 + AO353_05505 0.69 -0.7
1,220,547 + AO353_05505 0.69 +0.4
1,220,547 + AO353_05505 0.69 -0.5
1,220,590 - AO353_05505 0.74 +0.1
1,220,607 - AO353_05505 0.76 -1.5
1,220,700 + AO353_05505 0.88 +1.5
1,220,700 + AO353_05505 0.88 +0.2
1,220,700 + AO353_05505 0.88 +0.3
1,220,700 + AO353_05505 0.88 +0.9
1,220,700 + AO353_05505 0.88 -1.4
1,220,700 + AO353_05505 0.88 +0.4
1,220,700 + AO353_05505 0.88 -2.1
1,220,700 + AO353_05505 0.88 -0.9
1,220,701 - AO353_05505 0.88 +0.5
1,220,701 - AO353_05505 0.88 +0.4
1,220,786 + -0.1
1,220,787 - -0.4
1,220,787 - +0.7
1,220,893 - AO353_05510 0.17 -0.2
1,220,893 - AO353_05510 0.17 -0.8
1,220,904 + AO353_05510 0.19 -0.8
1,220,905 - AO353_05510 0.19 -0.5
1,220,905 - AO353_05510 0.19 -0.3
1,220,925 + AO353_05510 0.22 -0.5
1,220,926 - AO353_05510 0.22 -0.4
1,220,926 - AO353_05510 0.22 -1.1
1,220,931 + AO353_05510 0.23 +0.9
1,220,931 + AO353_05510 0.23 -1.7
1,220,931 + AO353_05510 0.23 -2.3
1,220,932 - AO353_05510 0.24 -1.1
1,220,932 - AO353_05510 0.24 -1.3
1,220,932 - AO353_05510 0.24 -2.4
1,220,932 - AO353_05510 0.24 -2.9
1,220,969 + AO353_05510 0.30 -0.4
1,220,969 + AO353_05510 0.30 -0.4
1,220,970 - AO353_05510 0.30 -0.1
1,221,033 + AO353_05510 0.42 -0.7
1,221,170 + AO353_05510 0.66 -1.3
1,221,171 - AO353_05510 0.66 -1.1
1,221,171 - AO353_05510 0.66 -0.1
1,221,171 - AO353_05510 0.66 -1.2
1,221,252 + AO353_05510 0.81 -0.6
1,221,262 + AO353_05510 0.82 -0.2
1,221,263 - AO353_05510 0.83 -0.3
1,221,263 - AO353_05510 0.83 -0.5
1,221,360 + -0.7
1,221,360 + -0.8
1,221,360 + -0.7
1,221,360 + +0.2
1,221,360 + -0.4
1,221,361 - +0.9
1,221,361 - -0.1
1,221,361 - -0.9
1,221,361 - +0.3
1,221,397 + -0.6
1,221,397 + +1.5
1,221,397 + +1.3
1,221,398 - -2.4
1,221,398 - -1.7
1,221,607 + AO353_05515 0.14 -1.5
1,221,607 + AO353_05515 0.14 -0.6
1,221,607 + AO353_05515 0.14 -1.5
1,221,607 + AO353_05515 0.14 -0.2
1,221,607 + AO353_05515 0.14 +1.1
1,221,607 + AO353_05515 0.14 -0.4
1,221,607 + AO353_05515 0.14 -0.7
1,221,608 - AO353_05515 0.15 -0.7
1,221,608 - AO353_05515 0.15 -0.8
1,221,608 - AO353_05515 0.15 -0.3
1,221,608 - AO353_05515 0.15 +0.9
1,221,608 - AO353_05515 0.15 -1.8
1,221,608 - AO353_05515 0.15 +1.2
1,221,608 - AO353_05515 0.15 +0.5
1,221,608 - AO353_05515 0.15 -1.1
1,221,608 - AO353_05515 0.15 -0.1
1,221,752 + AO353_05515 0.28 +0.2
1,221,753 - AO353_05515 0.28 +0.0
1,221,753 - AO353_05515 0.28 +0.4
1,221,753 - AO353_05515 0.28 +0.4
1,221,753 - AO353_05515 0.28 -0.6
1,221,901 + AO353_05515 0.41 -0.1
1,221,901 + AO353_05515 0.41 -0.6
1,221,901 + AO353_05515 0.41 -0.1
1,221,901 + AO353_05515 0.41 +0.0
1,221,902 - AO353_05515 0.42 +0.5
1,221,902 - AO353_05515 0.42 -0.3
1,221,902 - AO353_05515 0.42 -0.1
1,221,902 - AO353_05515 0.42 -1.8
1,221,902 - AO353_05515 0.42 -0.3
1,221,902 - AO353_05515 0.42 -2.3
1,221,928 + AO353_05515 0.44 +0.2
1,221,928 + AO353_05515 0.44 +1.4
1,221,928 + AO353_05515 0.44 +0.9
1,221,928 + AO353_05515 0.44 -1.0
1,221,928 + AO353_05515 0.44 -0.3
1,221,928 + AO353_05515 0.44 +1.9
1,221,928 + AO353_05515 0.44 +1.3
1,221,928 + AO353_05515 0.44 +0.3
1,221,928 + AO353_05515 0.44 +0.2
1,221,929 - AO353_05515 0.44 +1.7
1,221,929 - AO353_05515 0.44 -0.1
1,221,929 - AO353_05515 0.44 +1.3
1,221,929 - AO353_05515 0.44 +0.0
1,221,929 - AO353_05515 0.44 +0.2
1,221,929 - AO353_05515 0.44 +0.3
1,222,003 + AO353_05515 0.51 -1.3
1,222,165 + AO353_05515 0.66 +0.1
1,222,228 + AO353_05515 0.71 +1.3
1,222,229 - AO353_05515 0.72 -0.7

Or see this region's nucleotide sequence