Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05455

Experiment: A22 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05445 and AO353_05450 are separated by 79 nucleotidesAO353_05450 and AO353_05455 are separated by 2 nucleotidesAO353_05455 and AO353_05460 are separated by 206 nucleotides AO353_05445: AO353_05445 - ornithine decarboxylase, at 1,200,052 to 1,201,215 _05445 AO353_05450: AO353_05450 - hypothetical protein, at 1,201,295 to 1,202,053 _05450 AO353_05455: AO353_05455 - Fe(II)-dependent oxygenase, at 1,202,056 to 1,202,736 _05455 AO353_05460: AO353_05460 - ligand-gated channel protein, at 1,202,943 to 1,205,273 _05460 Position (kb) 1202 1203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1201.075 kb on + strand, within AO353_05445at 1201.075 kb on + strand, within AO353_05445at 1201.075 kb on + strand, within AO353_05445at 1201.075 kb on + strand, within AO353_05445at 1201.075 kb on + strand, within AO353_05445at 1201.075 kb on + strand, within AO353_05445at 1201.076 kb on - strand, within AO353_05445at 1201.076 kb on - strand, within AO353_05445at 1201.076 kb on - strand, within AO353_05445at 1201.076 kb on - strand, within AO353_05445at 1201.084 kb on + strand, within AO353_05445at 1201.084 kb on + strand, within AO353_05445at 1201.084 kb on + strand, within AO353_05445at 1201.084 kb on + strand, within AO353_05445at 1201.084 kb on + strand, within AO353_05445at 1201.084 kb on + strand, within AO353_05445at 1201.085 kb on - strand, within AO353_05445at 1201.085 kb on - strand, within AO353_05445at 1201.085 kb on - strand, within AO353_05445at 1201.090 kb on + strand, within AO353_05445at 1201.090 kb on + strand, within AO353_05445at 1201.091 kb on - strand, within AO353_05445at 1201.091 kb on - strand, within AO353_05445at 1201.091 kb on - strand, within AO353_05445at 1201.091 kb on - strand, within AO353_05445at 1201.091 kb on - strand, within AO353_05445at 1201.091 kb on - strand, within AO353_05445at 1201.129 kb on + strandat 1201.150 kb on + strandat 1201.151 kb on - strandat 1201.151 kb on - strandat 1201.151 kb on - strandat 1201.162 kb on + strandat 1201.162 kb on + strandat 1201.162 kb on + strandat 1201.162 kb on + strandat 1201.163 kb on - strandat 1201.163 kb on - strandat 1201.207 kb on + strandat 1201.207 kb on + strandat 1201.207 kb on + strandat 1201.207 kb on + strandat 1201.207 kb on + strandat 1201.207 kb on + strandat 1201.207 kb on + strandat 1201.207 kb on + strandat 1201.213 kb on + strandat 1201.214 kb on - strandat 1201.234 kb on + strandat 1201.234 kb on + strandat 1201.235 kb on - strandat 1201.235 kb on - strandat 1201.296 kb on + strandat 1201.296 kb on + strandat 1201.297 kb on - strandat 1201.530 kb on + strand, within AO353_05450at 1201.585 kb on - strand, within AO353_05450at 1201.701 kb on + strand, within AO353_05450at 1201.701 kb on + strand, within AO353_05450at 1201.701 kb on + strand, within AO353_05450at 1201.701 kb on + strand, within AO353_05450at 1201.701 kb on + strand, within AO353_05450at 1201.701 kb on + strand, within AO353_05450at 1201.701 kb on + strand, within AO353_05450at 1201.702 kb on - strand, within AO353_05450at 1201.702 kb on - strand, within AO353_05450at 1201.702 kb on - strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.707 kb on + strand, within AO353_05450at 1201.708 kb on - strand, within AO353_05450at 1201.708 kb on - strand, within AO353_05450at 1201.708 kb on - strand, within AO353_05450at 1201.765 kb on + strand, within AO353_05450at 1201.765 kb on + strand, within AO353_05450at 1201.765 kb on + strand, within AO353_05450at 1201.766 kb on - strand, within AO353_05450at 1201.766 kb on - strand, within AO353_05450at 1201.766 kb on - strand, within AO353_05450at 1201.766 kb on - strand, within AO353_05450at 1201.766 kb on - strand, within AO353_05450at 1201.777 kb on + strand, within AO353_05450at 1201.777 kb on + strand, within AO353_05450at 1201.777 kb on + strand, within AO353_05450at 1201.777 kb on + strand, within AO353_05450at 1201.778 kb on - strand, within AO353_05450at 1202.057 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.090 kb on + strandat 1202.091 kb on - strandat 1202.091 kb on - strandat 1202.091 kb on - strandat 1202.091 kb on - strandat 1202.228 kb on + strand, within AO353_05455at 1202.228 kb on + strand, within AO353_05455at 1202.228 kb on + strand, within AO353_05455at 1202.229 kb on - strand, within AO353_05455at 1202.229 kb on - strand, within AO353_05455at 1202.357 kb on + strand, within AO353_05455at 1202.358 kb on - strand, within AO353_05455at 1202.358 kb on - strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.477 kb on + strand, within AO353_05455at 1202.478 kb on - strand, within AO353_05455at 1202.478 kb on - strand, within AO353_05455at 1202.478 kb on - strand, within AO353_05455at 1202.478 kb on - strand, within AO353_05455at 1202.478 kb on - strand, within AO353_05455at 1202.478 kb on - strand, within AO353_05455at 1202.724 kb on + strandat 1202.724 kb on + strandat 1202.724 kb on + strandat 1202.724 kb on + strandat 1202.724 kb on + strandat 1202.725 kb on - strandat 1202.725 kb on - strandat 1202.725 kb on - strandat 1202.744 kb on + strandat 1202.745 kb on - strandat 1202.745 kb on - strandat 1202.745 kb on - strandat 1202.745 kb on - strandat 1202.850 kb on - strandat 1202.956 kb on + strandat 1202.956 kb on + strandat 1202.956 kb on + strandat 1202.956 kb on + strandat 1202.956 kb on + strandat 1202.957 kb on - strandat 1202.957 kb on - strandat 1202.957 kb on - strandat 1202.957 kb on - strandat 1202.957 kb on - strandat 1202.987 kb on - strandat 1203.066 kb on - strandat 1203.135 kb on + strandat 1203.135 kb on + strandat 1203.136 kb on - strandat 1203.165 kb on + strandat 1203.165 kb on + strandat 1203.165 kb on + strandat 1203.165 kb on + strandat 1203.166 kb on - strandat 1203.166 kb on - strandat 1203.166 kb on - strandat 1203.166 kb on - strandat 1203.166 kb on - strandat 1203.166 kb on - strandat 1203.326 kb on + strand, within AO353_05460at 1203.326 kb on + strand, within AO353_05460at 1203.326 kb on + strand, within AO353_05460at 1203.326 kb on + strand, within AO353_05460at 1203.327 kb on - strand, within AO353_05460at 1203.327 kb on - strand, within AO353_05460at 1203.327 kb on - strand, within AO353_05460at 1203.327 kb on - strand, within AO353_05460at 1203.327 kb on - strand, within AO353_05460at 1203.357 kb on + strand, within AO353_05460at 1203.357 kb on + strand, within AO353_05460at 1203.357 kb on + strand, within AO353_05460at 1203.358 kb on - strand, within AO353_05460at 1203.358 kb on - strand, within AO353_05460at 1203.358 kb on - strand, within AO353_05460at 1203.358 kb on - strand, within AO353_05460at 1203.358 kb on - strand, within AO353_05460at 1203.358 kb on - strand, within AO353_05460at 1203.358 kb on - strand, within AO353_05460at 1203.370 kb on + strand, within AO353_05460at 1203.370 kb on + strand, within AO353_05460at 1203.370 kb on + strand, within AO353_05460at 1203.370 kb on + strand, within AO353_05460at 1203.370 kb on + strand, within AO353_05460at 1203.370 kb on + strand, within AO353_05460at 1203.371 kb on - strand, within AO353_05460at 1203.371 kb on - strand, within AO353_05460at 1203.371 kb on - strand, within AO353_05460at 1203.371 kb on - strand, within AO353_05460at 1203.371 kb on - strand, within AO353_05460at 1203.559 kb on - strand, within AO353_05460at 1203.576 kb on + strand, within AO353_05460at 1203.576 kb on + strandat 1203.576 kb on + strand, within AO353_05460at 1203.577 kb on - strand, within AO353_05460at 1203.577 kb on - strand, within AO353_05460at 1203.657 kb on + strand, within AO353_05460at 1203.657 kb on + strand, within AO353_05460at 1203.657 kb on + strand, within AO353_05460at 1203.657 kb on + strand, within AO353_05460at 1203.658 kb on - strand, within AO353_05460at 1203.726 kb on + strand, within AO353_05460at 1203.726 kb on + strand, within AO353_05460at 1203.726 kb on + strand, within AO353_05460at 1203.727 kb on - strand, within AO353_05460at 1203.727 kb on - strand, within AO353_05460at 1203.727 kb on - strand, within AO353_05460at 1203.729 kb on + strand, within AO353_05460at 1203.729 kb on + strand, within AO353_05460at 1203.729 kb on + strand, within AO353_05460at 1203.729 kb on + strand, within AO353_05460at 1203.730 kb on - strand, within AO353_05460at 1203.730 kb on - strand, within AO353_05460at 1203.730 kb on - strand, within AO353_05460at 1203.730 kb on - strand, within AO353_05460at 1203.730 kb on - strand, within AO353_05460at 1203.730 kb on - strand, within AO353_05460

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.01 mg/ml
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1,201,075 + AO353_05445 0.88 -0.6
1,201,075 + AO353_05445 0.88 +1.4
1,201,075 + AO353_05445 0.88 -1.6
1,201,075 + AO353_05445 0.88 -1.0
1,201,075 + AO353_05445 0.88 -0.3
1,201,075 + AO353_05445 0.88 +0.5
1,201,076 - AO353_05445 0.88 -0.9
1,201,076 - AO353_05445 0.88 -0.7
1,201,076 - AO353_05445 0.88 -0.5
1,201,076 - AO353_05445 0.88 -2.0
1,201,084 + AO353_05445 0.89 -1.6
1,201,084 + AO353_05445 0.89 +0.8
1,201,084 + AO353_05445 0.89 +0.1
1,201,084 + AO353_05445 0.89 +0.0
1,201,084 + AO353_05445 0.89 -1.6
1,201,084 + AO353_05445 0.89 -0.5
1,201,085 - AO353_05445 0.89 -1.0
1,201,085 - AO353_05445 0.89 -0.7
1,201,085 - AO353_05445 0.89 -1.7
1,201,090 + AO353_05445 0.89 -0.4
1,201,090 + AO353_05445 0.89 -1.3
1,201,091 - AO353_05445 0.89 +0.0
1,201,091 - AO353_05445 0.89 -0.5
1,201,091 - AO353_05445 0.89 +0.0
1,201,091 - AO353_05445 0.89 -0.9
1,201,091 - AO353_05445 0.89 -1.4
1,201,091 - AO353_05445 0.89 -0.7
1,201,129 + -0.3
1,201,150 + -1.1
1,201,151 - -1.0
1,201,151 - -2.0
1,201,151 - -1.3
1,201,162 + -1.2
1,201,162 + +0.4
1,201,162 + -1.6
1,201,162 + +0.0
1,201,163 - -1.2
1,201,163 - -0.5
1,201,207 + -1.6
1,201,207 + -1.4
1,201,207 + +0.3
1,201,207 + -1.1
1,201,207 + -2.0
1,201,207 + -0.5
1,201,207 + -2.2
1,201,207 + -1.5
1,201,213 + -0.2
1,201,214 - -0.7
1,201,234 + -1.0
1,201,234 + +0.5
1,201,235 - -2.3
1,201,235 - +0.3
1,201,296 + -2.6
1,201,296 + +0.4
1,201,297 - -0.3
1,201,530 + AO353_05450 0.31 -0.9
1,201,585 - AO353_05450 0.38 -2.2
1,201,701 + AO353_05450 0.53 -0.1
1,201,701 + AO353_05450 0.53 +1.0
1,201,701 + AO353_05450 0.53 +0.1
1,201,701 + AO353_05450 0.53 -0.2
1,201,701 + AO353_05450 0.53 +0.3
1,201,701 + AO353_05450 0.53 -0.7
1,201,701 + AO353_05450 0.53 -1.2
1,201,702 - AO353_05450 0.54 +1.0
1,201,702 - AO353_05450 0.54 +0.0
1,201,702 - AO353_05450 0.54 -0.5
1,201,707 + AO353_05450 0.54 -1.0
1,201,707 + AO353_05450 0.54 +0.4
1,201,707 + AO353_05450 0.54 +3.0
1,201,707 + AO353_05450 0.54 -1.2
1,201,707 + AO353_05450 0.54 +0.6
1,201,707 + AO353_05450 0.54 -0.9
1,201,707 + AO353_05450 0.54 -0.2
1,201,707 + AO353_05450 0.54 +0.6
1,201,707 + AO353_05450 0.54 +0.0
1,201,707 + AO353_05450 0.54 -2.2
1,201,707 + AO353_05450 0.54 -0.8
1,201,707 + AO353_05450 0.54 +1.3
1,201,708 - AO353_05450 0.54 +0.4
1,201,708 - AO353_05450 0.54 -1.0
1,201,708 - AO353_05450 0.54 +0.1
1,201,765 + AO353_05450 0.62 -2.0
1,201,765 + AO353_05450 0.62 -1.7
1,201,765 + AO353_05450 0.62 -2.2
1,201,766 - AO353_05450 0.62 -1.6
1,201,766 - AO353_05450 0.62 -2.1
1,201,766 - AO353_05450 0.62 -1.7
1,201,766 - AO353_05450 0.62 +1.8
1,201,766 - AO353_05450 0.62 -1.0
1,201,777 + AO353_05450 0.64 -0.5
1,201,777 + AO353_05450 0.64 -1.5
1,201,777 + AO353_05450 0.64 -2.6
1,201,777 + AO353_05450 0.64 +0.1
1,201,778 - AO353_05450 0.64 -1.0
1,202,057 + +0.4
1,202,090 + -0.1
1,202,090 + -1.0
1,202,090 + +0.1
1,202,090 + -0.4
1,202,090 + -0.4
1,202,090 + +0.5
1,202,090 + -0.9
1,202,090 + +0.4
1,202,090 + +1.1
1,202,090 + +1.3
1,202,091 - -0.2
1,202,091 - +0.3
1,202,091 - +0.0
1,202,091 - -1.5
1,202,228 + AO353_05455 0.25 -0.2
1,202,228 + AO353_05455 0.25 -1.9
1,202,228 + AO353_05455 0.25 -0.3
1,202,229 - AO353_05455 0.25 -0.2
1,202,229 - AO353_05455 0.25 -0.1
1,202,357 + AO353_05455 0.44 -0.1
1,202,358 - AO353_05455 0.44 -0.7
1,202,358 - AO353_05455 0.44 -2.9
1,202,477 + AO353_05455 0.62 -1.0
1,202,477 + AO353_05455 0.62 -2.0
1,202,477 + AO353_05455 0.62 -0.3
1,202,477 + AO353_05455 0.62 -0.8
1,202,477 + AO353_05455 0.62 +0.1
1,202,477 + AO353_05455 0.62 -1.8
1,202,477 + AO353_05455 0.62 -0.5
1,202,477 + AO353_05455 0.62 +0.8
1,202,478 - AO353_05455 0.62 -1.5
1,202,478 - AO353_05455 0.62 -2.0
1,202,478 - AO353_05455 0.62 +1.3
1,202,478 - AO353_05455 0.62 -0.3
1,202,478 - AO353_05455 0.62 -2.1
1,202,478 - AO353_05455 0.62 -1.0
1,202,724 + -0.6
1,202,724 + -0.5
1,202,724 + -0.8
1,202,724 + +0.5
1,202,724 + +0.5
1,202,725 - -1.2
1,202,725 - -1.2
1,202,725 - +0.8
1,202,744 + +0.1
1,202,745 - -0.7
1,202,745 - -1.4
1,202,745 - +2.3
1,202,745 - +1.2
1,202,850 - -1.0
1,202,956 + -0.9
1,202,956 + -0.5
1,202,956 + -0.2
1,202,956 + +1.3
1,202,956 + +0.3
1,202,957 - -2.0
1,202,957 - +0.0
1,202,957 - -1.0
1,202,957 - -1.3
1,202,957 - -0.3
1,202,987 - +0.8
1,203,066 - +0.6
1,203,135 + +0.3
1,203,135 + -1.2
1,203,136 - -0.2
1,203,165 + -0.2
1,203,165 + +0.3
1,203,165 + -0.2
1,203,165 + -1.2
1,203,166 - -0.2
1,203,166 - -0.2
1,203,166 - +0.3
1,203,166 - -1.4
1,203,166 - -0.7
1,203,166 - -1.0
1,203,326 + AO353_05460 0.16 -1.5
1,203,326 + AO353_05460 0.16 -1.1
1,203,326 + AO353_05460 0.16 -0.7
1,203,326 + AO353_05460 0.16 -1.3
1,203,327 - AO353_05460 0.16 +0.6
1,203,327 - AO353_05460 0.16 -0.9
1,203,327 - AO353_05460 0.16 -1.3
1,203,327 - AO353_05460 0.16 +0.3
1,203,327 - AO353_05460 0.16 +0.2
1,203,357 + AO353_05460 0.18 +0.8
1,203,357 + AO353_05460 0.18 +0.0
1,203,357 + AO353_05460 0.18 -0.2
1,203,358 - AO353_05460 0.18 +0.5
1,203,358 - AO353_05460 0.18 +0.4
1,203,358 - AO353_05460 0.18 -0.5
1,203,358 - AO353_05460 0.18 +0.5
1,203,358 - AO353_05460 0.18 -1.0
1,203,358 - AO353_05460 0.18 -0.3
1,203,358 - AO353_05460 0.18 -0.7
1,203,370 + AO353_05460 0.18 -0.9
1,203,370 + AO353_05460 0.18 -1.3
1,203,370 + AO353_05460 0.18 -1.5
1,203,370 + AO353_05460 0.18 +0.0
1,203,370 + AO353_05460 0.18 -0.2
1,203,370 + AO353_05460 0.18 +1.2
1,203,371 - AO353_05460 0.18 +0.4
1,203,371 - AO353_05460 0.18 +0.7
1,203,371 - AO353_05460 0.18 -0.6
1,203,371 - AO353_05460 0.18 +0.1
1,203,371 - AO353_05460 0.18 +0.7
1,203,559 - AO353_05460 0.26 -1.2
1,203,576 + AO353_05460 0.27 +0.6
1,203,576 + +0.3
1,203,576 + AO353_05460 0.27 -0.1
1,203,577 - AO353_05460 0.27 +0.2
1,203,577 - AO353_05460 0.27 -2.0
1,203,657 + AO353_05460 0.31 +0.4
1,203,657 + AO353_05460 0.31 -0.7
1,203,657 + AO353_05460 0.31 +0.3
1,203,657 + AO353_05460 0.31 +0.7
1,203,658 - AO353_05460 0.31 +0.4
1,203,726 + AO353_05460 0.34 -2.0
1,203,726 + AO353_05460 0.34 -0.7
1,203,726 + AO353_05460 0.34 +0.3
1,203,727 - AO353_05460 0.34 -1.2
1,203,727 - AO353_05460 0.34 -2.0
1,203,727 - AO353_05460 0.34 +0.8
1,203,729 + AO353_05460 0.34 -1.2
1,203,729 + AO353_05460 0.34 -1.7
1,203,729 + AO353_05460 0.34 -1.0
1,203,729 + AO353_05460 0.34 -0.2
1,203,730 - AO353_05460 0.34 +0.4
1,203,730 - AO353_05460 0.34 -1.2
1,203,730 - AO353_05460 0.34 +0.8
1,203,730 - AO353_05460 0.34 +0.4
1,203,730 - AO353_05460 0.34 +0.3
1,203,730 - AO353_05460 0.34 -0.2

Or see this region's nucleotide sequence