Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04555 and AO353_04560 are separated by 147 nucleotides AO353_04560 and AO353_04565 are separated by 396 nucleotides AO353_04565 and AO353_04570 overlap by 1 nucleotides AO353_04570 and AO353_04575 are separated by 162 nucleotides
AO353_04555: AO353_04555 - 23S rRNA methyltransferase, at 985,004 to 986,026
_04555
AO353_04560: AO353_04560 - dipicolinate synthase, at 986,174 to 986,455
_04560
AO353_04565: AO353_04565 - nucleoid-associated protein, at 986,852 to 987,856
_04565
AO353_04570: AO353_04570 - glutaredoxin, at 987,856 to 988,206
_04570
AO353_04575: AO353_04575 - glutathione S-transferase, at 988,369 to 989,304
_04575
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 985.905 kb on + strand, within AO353_04555 at 985.906 kb on - strand, within AO353_04555 at 985.978 kb on + strand at 986.028 kb on + strand at 986.029 kb on - strand at 986.029 kb on - strand at 986.175 kb on + strand at 986.175 kb on + strand at 986.175 kb on + strand at 986.175 kb on + strand at 986.175 kb on + strand at 986.175 kb on + strand at 986.176 kb on - strand at 986.176 kb on - strand at 986.176 kb on - strand at 986.176 kb on - strand at 986.182 kb on + strand at 986.183 kb on - strand at 986.183 kb on - strand at 986.203 kb on + strand, within AO353_04560 at 986.222 kb on - strand, within AO353_04560 at 986.411 kb on - strand, within AO353_04560 at 986.443 kb on + strand at 986.443 kb on + strand at 986.443 kb on + strand at 986.443 kb on + strand at 986.444 kb on - strand at 986.444 kb on - strand at 986.444 kb on - strand at 986.444 kb on - strand at 986.444 kb on - strand at 986.446 kb on + strand at 986.446 kb on + strand at 986.446 kb on + strand at 986.446 kb on + strand at 986.446 kb on + strand at 986.447 kb on - strand at 986.447 kb on - strand at 986.447 kb on - strand at 986.447 kb on - strand at 986.447 kb on - strand at 986.544 kb on + strand at 986.545 kb on - strand at 986.545 kb on - strand at 986.545 kb on - strand at 986.567 kb on - strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.568 kb on + strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.569 kb on - strand at 986.620 kb on + strand at 986.638 kb on + strand at 986.655 kb on - strand at 986.673 kb on + strand at 986.673 kb on + strand at 986.673 kb on + strand at 986.674 kb on - strand at 986.683 kb on + strand at 986.683 kb on + strand at 986.684 kb on - strand at 986.684 kb on - strand at 986.684 kb on - strand at 986.688 kb on - strand at 986.705 kb on + strand at 986.706 kb on - strand at 986.706 kb on - strand at 986.713 kb on + strand at 986.734 kb on - strand at 986.734 kb on - strand at 986.734 kb on - strand at 986.734 kb on - strand at 986.793 kb on + strand at 986.793 kb on + strand at 986.793 kb on + strand at 986.794 kb on - strand at 986.794 kb on - strand at 986.962 kb on + strand, within AO353_04565 at 986.962 kb on + strand, within AO353_04565 at 986.962 kb on + strand, within AO353_04565 at 986.962 kb on + strand, within AO353_04565 at 986.962 kb on + strand, within AO353_04565 at 986.987 kb on + strand, within AO353_04565 at 986.987 kb on + strand, within AO353_04565 at 986.987 kb on + strand, within AO353_04565 at 986.988 kb on - strand, within AO353_04565 at 986.988 kb on - strand, within AO353_04565 at 986.988 kb on - strand, within AO353_04565 at 986.988 kb on - strand, within AO353_04565 at 986.988 kb on - strand, within AO353_04565 at 987.069 kb on - strand, within AO353_04565 at 987.183 kb on - strand, within AO353_04565 at 987.183 kb on - strand, within AO353_04565 at 987.357 kb on - strand, within AO353_04565 at 987.357 kb on - strand, within AO353_04565 at 987.357 kb on - strand, within AO353_04565 at 987.401 kb on + strand, within AO353_04565 at 987.401 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.545 kb on + strand, within AO353_04565 at 987.632 kb on + strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.633 kb on - strand, within AO353_04565 at 987.779 kb on + strand at 987.869 kb on + strand at 987.869 kb on + strand at 987.870 kb on - strand at 987.870 kb on - strand at 987.911 kb on - strand, within AO353_04570 at 987.998 kb on - strand, within AO353_04570 at 987.998 kb on - strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.108 kb on + strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.109 kb on - strand, within AO353_04570 at 988.133 kb on + strand, within AO353_04570 at 988.204 kb on + strand at 988.204 kb on + strand at 988.204 kb on + strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.205 kb on - strand at 988.259 kb on + strand at 988.260 kb on - strand at 988.288 kb on + strand at 988.288 kb on + strand at 988.288 kb on + strand at 988.289 kb on - strand at 988.289 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.298 kb on - strand at 988.483 kb on + strand, within AO353_04575 at 988.483 kb on + strand, within AO353_04575 at 988.483 kb on + strand, within AO353_04575 at 988.484 kb on - strand, within AO353_04575 at 988.502 kb on + strand, within AO353_04575 at 988.503 kb on - strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.522 kb on + strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.523 kb on - strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.784 kb on + strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575 at 988.785 kb on - strand, within AO353_04575
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 985,905 + AO353_04555 0.88 +0.2 985,906 - AO353_04555 0.88 +0.1 985,978 + +0.2 986,028 + +0.7 986,029 - -0.8 986,029 - -0.3 986,175 + -1.2 986,175 + -0.8 986,175 + -1.3 986,175 + -1.4 986,175 + +1.5 986,175 + -0.6 986,176 - -0.8 986,176 - +0.9 986,176 - +0.2 986,176 - +0.3 986,182 + -1.4 986,183 - -1.2 986,183 - +2.3 986,203 + AO353_04560 0.10 +1.2 986,222 - AO353_04560 0.17 +0.7 986,411 - AO353_04560 0.84 -0.6 986,443 + +0.2 986,443 + +0.2 986,443 + -1.1 986,443 + +0.7 986,444 - -0.6 986,444 - -0.5 986,444 - -0.5 986,444 - +0.0 986,444 - -0.8 986,446 + -0.1 986,446 + +0.2 986,446 + -0.8 986,446 + +0.5 986,446 + +0.4 986,447 - -0.5 986,447 - +1.3 986,447 - -0.6 986,447 - +0.2 986,447 - +0.2 986,544 + -0.4 986,545 - -0.2 986,545 - +0.7 986,545 - +0.3 986,567 - -0.3 986,568 + +0.9 986,568 + -1.3 986,568 + +0.4 986,568 + -1.3 986,568 + +0.6 986,568 + -0.4 986,568 + +3.1 986,568 + +0.4 986,568 + -1.3 986,568 + -0.4 986,568 + +3.1 986,568 + -0.6 986,568 + -0.2 986,568 + +0.4 986,568 + +0.7 986,568 + -1.6 986,568 + -0.2 986,568 + +1.5 986,569 - +0.6 986,569 - +0.7 986,569 - +0.2 986,569 - +1.7 986,569 - +1.0 986,569 - +0.6 986,569 - +0.3 986,569 - -2.3 986,569 - -1.0 986,569 - -0.1 986,569 - -1.0 986,569 - +1.0 986,569 - +0.7 986,569 - +0.2 986,569 - -0.5 986,569 - +1.1 986,569 - +0.1 986,569 - +0.3 986,569 - -2.1 986,620 + +0.2 986,638 + -0.1 986,655 - -0.8 986,673 + +1.2 986,673 + -1.4 986,673 + -0.8 986,674 - +1.3 986,683 + -0.4 986,683 + +0.9 986,684 - -0.8 986,684 - -0.1 986,684 - +0.3 986,688 - -2.3 986,705 + +1.7 986,706 - +0.5 986,706 - -1.2 986,713 + -1.3 986,734 - +0.3 986,734 - +0.9 986,734 - +0.8 986,734 - -0.4 986,793 + +0.1 986,793 + +0.3 986,793 + +0.3 986,794 - -0.6 986,794 - -0.4 986,962 + AO353_04565 0.11 +0.2 986,962 + AO353_04565 0.11 -1.3 986,962 + AO353_04565 0.11 -1.1 986,962 + AO353_04565 0.11 -0.3 986,962 + AO353_04565 0.11 -2.6 986,987 + AO353_04565 0.13 -1.8 986,987 + AO353_04565 0.13 -2.3 986,987 + AO353_04565 0.13 -1.6 986,988 - AO353_04565 0.14 +0.2 986,988 - AO353_04565 0.14 -2.7 986,988 - AO353_04565 0.14 -0.6 986,988 - AO353_04565 0.14 -2.6 986,988 - AO353_04565 0.14 +0.2 987,069 - AO353_04565 0.22 -2.5 987,183 - AO353_04565 0.33 -0.4 987,183 - AO353_04565 0.33 -1.7 987,357 - AO353_04565 0.50 -2.3 987,357 - AO353_04565 0.50 -2.1 987,357 - AO353_04565 0.50 -2.3 987,401 + AO353_04565 0.55 -2.3 987,401 + AO353_04565 0.55 -1.4 987,545 + AO353_04565 0.69 -0.3 987,545 + AO353_04565 0.69 -1.1 987,545 + AO353_04565 0.69 -1.3 987,632 + AO353_04565 0.78 -0.6 987,633 - AO353_04565 0.78 -1.0 987,633 - AO353_04565 0.78 -0.8 987,633 - AO353_04565 0.78 -1.3 987,633 - AO353_04565 0.78 -1.3 987,779 + -2.4 987,869 + +0.3 987,869 + -0.4 987,870 - +0.2 987,870 - +0.5 987,911 - AO353_04570 0.16 -1.3 987,998 - AO353_04570 0.40 +0.0 987,998 - AO353_04570 0.40 +0.2 988,108 + AO353_04570 0.72 -0.3 988,108 + AO353_04570 0.72 -0.2 988,108 + AO353_04570 0.72 +0.1 988,108 + AO353_04570 0.72 +1.2 988,108 + AO353_04570 0.72 -2.1 988,108 + AO353_04570 0.72 +0.6 988,108 + AO353_04570 0.72 -0.9 988,108 + AO353_04570 0.72 +0.2 988,108 + AO353_04570 0.72 -0.5 988,108 + AO353_04570 0.72 +0.3 988,109 - AO353_04570 0.72 +1.0 988,109 - AO353_04570 0.72 +0.3 988,109 - AO353_04570 0.72 +0.6 988,109 - AO353_04570 0.72 -0.6 988,133 + AO353_04570 0.79 +1.7 988,204 + -0.3 988,204 + +0.0 988,204 + -0.8 988,205 - -0.8 988,205 - -0.5 988,205 - +0.5 988,205 - +0.2 988,205 - +1.9 988,205 - +1.6 988,205 - -0.6 988,205 - +0.5 988,205 - +0.2 988,205 - +0.4 988,205 - +0.7 988,205 - -0.1 988,259 + -0.5 988,260 - +1.7 988,288 + +1.3 988,288 + -1.2 988,288 + -1.6 988,289 - +0.4 988,289 - +0.4 988,298 - -0.3 988,298 - -0.4 988,298 - -0.1 988,298 - -1.3 988,483 + AO353_04575 0.12 +1.4 988,483 + AO353_04575 0.12 +2.0 988,483 + AO353_04575 0.12 +1.2 988,484 - AO353_04575 0.12 +0.5 988,502 + AO353_04575 0.14 -0.8 988,503 - AO353_04575 0.14 +0.5 988,522 + AO353_04575 0.16 -1.2 988,522 + AO353_04575 0.16 +0.2 988,522 + AO353_04575 0.16 -1.6 988,522 + AO353_04575 0.16 +0.1 988,522 + AO353_04575 0.16 -1.4 988,522 + AO353_04575 0.16 +0.5 988,522 + AO353_04575 0.16 +0.3 988,522 + AO353_04575 0.16 +0.0 988,523 - AO353_04575 0.16 -2.8 988,523 - AO353_04575 0.16 -0.6 988,523 - AO353_04575 0.16 -0.7 988,523 - AO353_04575 0.16 -2.0 988,523 - AO353_04575 0.16 -0.4 988,523 - AO353_04575 0.16 +0.5 988,523 - AO353_04575 0.16 +0.6 988,784 + AO353_04575 0.44 -1.8 988,784 + AO353_04575 0.44 -0.8 988,784 + AO353_04575 0.44 +0.3 988,784 + AO353_04575 0.44 -2.1 988,785 - AO353_04575 0.44 -1.6 988,785 - AO353_04575 0.44 +2.5 988,785 - AO353_04575 0.44 +1.1 988,785 - AO353_04575 0.44 +2.4
Or see this region's nucleotide sequence