Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02490 and AO353_02495 are separated by 140 nucleotides AO353_02495 and AO353_02500 are separated by 19 nucleotides AO353_02500 and AO353_02505 are separated by 186 nucleotides AO353_02505 and AO353_02510 are separated by 19 nucleotides AO353_02510 and AO353_02515 are separated by 160 nucleotides AO353_02515 and AO353_02520 are separated by 145 nucleotides
AO353_02490: AO353_02490 - catalase, at 533,622 to 534,758
_02490
AO353_02495: AO353_02495 - tRNA-Asp, at 534,899 to 534,975
_02495
AO353_02500: AO353_02500 - tRNA-Val, at 534,995 to 535,070
_02500
AO353_02505: AO353_02505 - tRNA-Asp, at 535,257 to 535,333
_02505
AO353_02510: AO353_02510 - tRNA-Val, at 535,353 to 535,428
_02510
AO353_02515: AO353_02515 - recombination-associated protein RdgC, at 535,589 to 536,509
_02515
AO353_02520: AO353_02520 - sodium transporter, at 536,655 to 537,620
_02520
Position (kb) 535
536
537 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 534.698 kb on - strand at 534.701 kb on + strand at 534.701 kb on + strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.702 kb on - strand at 534.711 kb on + strand at 534.712 kb on - strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.756 kb on + strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.757 kb on - strand at 534.759 kb on + strand at 534.760 kb on - strand at 534.760 kb on - strand at 534.760 kb on - strand at 534.760 kb on - strand at 534.818 kb on + strand at 534.818 kb on + strand at 534.819 kb on - strand at 534.819 kb on - strand at 534.898 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 534.992 kb on - strand at 535.125 kb on - strand at 535.167 kb on + strand at 535.167 kb on + strand at 535.168 kb on - strand at 535.187 kb on + strand at 535.188 kb on - strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.534 kb on + strand at 535.535 kb on - strand at 535.535 kb on - strand at 535.553 kb on + strand at 535.554 kb on - strand at 535.554 kb on - strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.568 kb on + strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.569 kb on - strand at 535.570 kb on + strand at 535.570 kb on + strand at 535.570 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.609 kb on + strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.610 kb on - strand at 535.613 kb on + strand at 535.614 kb on - strand at 535.614 kb on - strand at 535.614 kb on - strand at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.886 kb on + strand, within AO353_02515 at 535.886 kb on + strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.949 kb on - strand, within AO353_02515 at 536.076 kb on + strand, within AO353_02515 at 536.077 kb on - strand, within AO353_02515 at 536.160 kb on + strand, within AO353_02515 at 536.161 kb on - strand, within AO353_02515 at 536.266 kb on + strand, within AO353_02515 at 536.266 kb on + strand, within AO353_02515 at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.508 kb on - strand at 536.516 kb on + strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.601 kb on - strand at 536.628 kb on + strand at 536.637 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.725 kb on + strand at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 534,698 - -1.4 534,701 + +0.3 534,701 + +0.0 534,702 - -0.0 534,702 - +0.0 534,702 - +1.2 534,702 - +1.8 534,702 - +1.3 534,702 - +0.9 534,711 + +1.5 534,712 - +2.4 534,756 + -1.9 534,756 + -0.1 534,756 + -0.8 534,756 + +0.7 534,756 + +1.6 534,757 - +1.2 534,757 - +0.0 534,757 - -0.8 534,757 - +1.3 534,757 - +0.8 534,759 + +0.9 534,760 - -2.2 534,760 - +0.0 534,760 - +1.6 534,760 - -1.4 534,818 + -2.2 534,818 + -2.0 534,819 - +0.6 534,819 - -1.5 534,898 - +0.3 534,992 - -0.3 534,992 - +1.0 534,992 - +1.0 534,992 - -2.5 534,992 - -1.1 534,992 - +0.6 535,125 - +1.6 535,167 + +0.3 535,167 + +0.9 535,168 - -1.0 535,187 + +0.0 535,188 - +0.8 535,518 + +0.0 535,518 + -0.4 535,519 - -1.3 535,519 - +3.0 535,534 + -1.4 535,535 - -1.1 535,535 - +0.6 535,553 + -0.3 535,554 - -0.5 535,554 - +1.2 535,568 + -0.2 535,568 + +0.8 535,568 + -0.3 535,568 + +1.3 535,568 + +0.0 535,568 + +0.5 535,569 - -1.5 535,569 - +0.2 535,569 - -0.7 535,569 - -0.4 535,569 - +0.0 535,569 - -1.2 535,570 + -2.3 535,570 + -0.4 535,570 + -0.3 535,609 + +0.2 535,609 + -0.6 535,609 + -0.7 535,609 + -1.4 535,609 + +1.0 535,610 - +0.0 535,610 - -0.3 535,610 - -0.3 535,610 - +0.0 535,610 - +0.8 535,610 - -1.0 535,610 - -0.4 535,610 - +1.4 535,610 - -1.6 535,610 - +0.0 535,610 - +0.0 535,610 - +0.4 535,613 + -1.4 535,614 - -1.1 535,614 - +0.3 535,614 - +0.3 535,712 + AO353_02515 0.13 -1.2 535,712 + AO353_02515 0.13 -0.7 535,712 + AO353_02515 0.13 -0.5 535,712 + AO353_02515 0.13 -0.8 535,712 + AO353_02515 0.13 -1.2 535,713 - AO353_02515 0.13 -0.9 535,713 - AO353_02515 0.13 -0.4 535,713 - AO353_02515 0.13 -1.6 535,758 + AO353_02515 0.18 +0.0 535,758 + AO353_02515 0.18 -2.5 535,758 + AO353_02515 0.18 -0.7 535,758 + AO353_02515 0.18 +0.0 535,758 + AO353_02515 0.18 +0.8 535,758 + AO353_02515 0.18 +0.6 535,759 - AO353_02515 0.18 +0.0 535,759 - AO353_02515 0.18 -0.7 535,759 - AO353_02515 0.18 -1.1 535,759 - AO353_02515 0.18 -1.2 535,759 - AO353_02515 0.18 -0.6 535,759 - AO353_02515 0.18 +0.2 535,759 - AO353_02515 0.18 -1.0 535,886 + AO353_02515 0.32 -1.4 535,886 + AO353_02515 0.32 -0.7 535,887 - AO353_02515 0.32 -1.2 535,887 - AO353_02515 0.32 -0.1 535,887 - AO353_02515 0.32 +0.2 535,887 - AO353_02515 0.32 -1.8 535,888 + AO353_02515 0.32 -2.7 535,888 + AO353_02515 0.32 -0.1 535,888 + AO353_02515 0.32 -1.1 535,949 - AO353_02515 0.39 +0.4 536,076 + AO353_02515 0.53 -0.0 536,077 - AO353_02515 0.53 -0.8 536,160 + AO353_02515 0.62 +0.6 536,161 - AO353_02515 0.62 +1.2 536,266 + AO353_02515 0.74 -0.4 536,266 + AO353_02515 0.74 -1.2 536,507 + +0.3 536,507 + +0.4 536,507 + -0.3 536,507 + +1.4 536,507 + -0.4 536,508 - -0.2 536,516 + -0.8 536,546 - -0.1 536,546 - +0.2 536,546 - -0.4 536,546 - -1.0 536,546 - +0.2 536,546 - +0.5 536,578 + +1.0 536,578 + -0.3 536,578 + +2.1 536,578 + +0.3 536,578 + +0.9 536,579 - -0.5 536,579 - +0.2 536,579 - -1.1 536,579 - +0.3 536,579 - -0.4 536,583 + +0.3 536,583 + +0.6 536,583 + -0.5 536,583 + -0.1 536,583 + +0.6 536,583 + +0.0 536,583 + -1.2 536,584 - -1.0 536,584 - +0.8 536,584 - -0.4 536,584 - +1.3 536,584 - -1.4 536,584 - +0.0 536,601 - -0.6 536,628 + +0.3 536,637 + -0.3 536,639 + -1.2 536,639 + -1.4 536,639 + +1.0 536,639 + -0.1 536,639 + +0.6 536,639 + -1.8 536,639 + -0.5 536,639 + -0.2 536,639 + +0.3 536,639 + -0.5 536,639 + -1.5 536,640 - +0.2 536,640 - +0.2 536,640 - -0.2 536,640 - -1.3 536,640 - -0.3 536,640 - +0.0 536,640 - +0.5 536,640 - -0.8 536,640 - +0.5 536,640 - +0.2 536,640 - -0.4 536,640 - +0.6 536,640 - +0.4 536,640 - +0.3 536,640 - -0.3 536,640 - -0.7 536,640 - +0.9 536,640 - +0.9 536,640 - -0.7 536,640 - +0.3 536,640 - +0.1 536,640 - +0.9 536,725 + -0.4 537,351 - AO353_02520 0.72 +0.3 537,351 - AO353_02520 0.72 +0.4 537,351 - AO353_02520 0.72 -0.1 537,375 + AO353_02520 0.75 -0.4 537,375 + AO353_02520 0.75 +1.5
Or see this region's nucleotide sequence