Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00815 and AO353_00820 are separated by 10 nucleotides AO353_00820 and AO353_00825 are separated by 105 nucleotides AO353_00825 and AO353_00830 are separated by 107 nucleotides AO353_00830 and AO353_00835 are separated by 114 nucleotides
AO353_00815: AO353_00815 - Nitrate reductase (EC 1.7.99.4) <small>(from data)</small>, at 185,539 to 188,256
_00815
AO353_00820: AO353_00820 - uroporphyrin-III methyltransferase, at 188,267 to 189,040
_00820
AO353_00825: AO353_00825 - porin, at 189,146 to 190,120
_00825
AO353_00830: AO353_00830 - RNA polymerase subunit sigma, at 190,228 to 190,794
_00830
AO353_00835: AO353_00835 - transporter, at 190,909 to 191,733
_00835
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.261 kb on + strand at 188.261 kb on + strand at 188.261 kb on + strand at 188.261 kb on + strand at 188.261 kb on + strand at 188.262 kb on - strand at 188.335 kb on - strand at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.358 kb on + strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.359 kb on - strand, within AO353_00820 at 188.489 kb on + strand, within AO353_00820 at 188.647 kb on + strand, within AO353_00820 at 188.647 kb on + strand, within AO353_00820 at 188.648 kb on - strand, within AO353_00820 at 188.682 kb on + strand, within AO353_00820 at 188.722 kb on + strand, within AO353_00820 at 188.722 kb on + strand, within AO353_00820 at 188.723 kb on - strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.765 kb on + strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 188.766 kb on - strand, within AO353_00820 at 189.007 kb on + strand at 189.008 kb on - strand at 189.008 kb on - strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.038 kb on + strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.039 kb on - strand at 189.088 kb on - strand at 189.135 kb on + strand at 189.144 kb on - strand at 189.144 kb on - strand at 189.147 kb on + strand at 189.148 kb on - strand at 189.148 kb on - strand at 189.148 kb on - strand at 189.177 kb on - strand at 189.334 kb on - strand, within AO353_00825 at 189.371 kb on + strand, within AO353_00825 at 189.637 kb on - strand, within AO353_00825 at 189.681 kb on + strand, within AO353_00825 at 189.682 kb on - strand, within AO353_00825 at 189.682 kb on - strand, within AO353_00825 at 189.682 kb on - strand, within AO353_00825 at 189.790 kb on - strand, within AO353_00825 at 189.910 kb on - strand, within AO353_00825 at 189.946 kb on - strand, within AO353_00825 at 190.147 kb on - strand at 190.209 kb on - strand at 190.230 kb on - strand at 190.230 kb on - strand at 190.395 kb on - strand, within AO353_00830 at 190.575 kb on + strand, within AO353_00830 at 190.674 kb on + strand, within AO353_00830 at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.893 kb on - strand at 190.893 kb on - strand at 190.921 kb on - strand at 190.986 kb on + strand at 191.057 kb on + strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 188,261 + +0.4 188,261 + +1.8 188,261 + -0.1 188,261 + +0.4 188,261 + +2.5 188,262 - -0.1 188,335 - +0.6 188,358 + AO353_00820 0.12 +0.5 188,358 + AO353_00820 0.12 +0.2 188,358 + AO353_00820 0.12 +1.5 188,358 + AO353_00820 0.12 -0.1 188,358 + AO353_00820 0.12 -1.4 188,358 + AO353_00820 0.12 +0.6 188,358 + AO353_00820 0.12 +0.5 188,358 + AO353_00820 0.12 +0.4 188,358 + AO353_00820 0.12 +0.5 188,358 + AO353_00820 0.12 -0.6 188,359 - AO353_00820 0.12 +1.2 188,359 - AO353_00820 0.12 +0.7 188,359 - AO353_00820 0.12 +0.8 188,359 - AO353_00820 0.12 -1.2 188,489 + AO353_00820 0.29 -0.2 188,647 + AO353_00820 0.49 +0.3 188,647 + AO353_00820 0.49 -1.3 188,648 - AO353_00820 0.49 +1.5 188,682 + AO353_00820 0.54 -0.8 188,722 + AO353_00820 0.59 -0.5 188,722 + AO353_00820 0.59 +1.2 188,723 - AO353_00820 0.59 +1.8 188,765 + AO353_00820 0.64 -1.0 188,765 + AO353_00820 0.64 -0.1 188,765 + AO353_00820 0.64 +0.8 188,765 + AO353_00820 0.64 -1.6 188,765 + AO353_00820 0.64 +1.5 188,765 + AO353_00820 0.64 +0.0 188,766 - AO353_00820 0.64 +0.4 188,766 - AO353_00820 0.64 +0.7 188,766 - AO353_00820 0.64 +1.7 188,766 - AO353_00820 0.64 -0.2 188,766 - AO353_00820 0.64 -0.5 189,007 + -0.8 189,008 - +0.9 189,008 - -1.3 189,038 + +0.0 189,038 + +0.5 189,038 + +0.8 189,038 + +0.3 189,038 + -0.6 189,039 - -0.1 189,039 - +0.5 189,039 - +1.3 189,039 - -1.4 189,039 - -1.8 189,039 - -1.1 189,088 - -1.3 189,135 + -2.1 189,144 - -1.3 189,144 - -1.5 189,147 + -2.4 189,148 - -0.1 189,148 - -1.1 189,148 - -0.3 189,177 - -2.4 189,334 - AO353_00825 0.19 -1.1 189,371 + AO353_00825 0.23 -1.7 189,637 - AO353_00825 0.50 +1.5 189,681 + AO353_00825 0.55 -1.7 189,682 - AO353_00825 0.55 -0.1 189,682 - AO353_00825 0.55 -0.8 189,682 - AO353_00825 0.55 -0.7 189,790 - AO353_00825 0.66 -1.5 189,910 - AO353_00825 0.78 +0.1 189,946 - AO353_00825 0.82 -2.3 190,147 - -1.0 190,209 - -0.8 190,230 - +0.9 190,230 - +1.0 190,395 - AO353_00830 0.29 +0.5 190,575 + AO353_00830 0.61 +0.9 190,674 + AO353_00830 0.79 -0.8 190,888 - -0.5 190,888 - +1.8 190,888 - +1.1 190,888 - +1.8 190,888 - -0.1 190,888 - -2.2 190,888 - -0.1 190,888 - -0.6 190,888 - +0.9 190,888 - +0.2 190,893 - -0.7 190,893 - +1.6 190,921 - -0.5 190,986 + +0.9 191,057 + AO353_00835 0.18 -0.7 191,058 - AO353_00835 0.18 -0.1 191,058 - AO353_00835 0.18 -0.6 191,058 - AO353_00835 0.18 -1.4 191,058 - AO353_00835 0.18 -0.3 191,073 - AO353_00835 0.20 -0.8 191,073 - AO353_00835 0.20 -0.5 191,073 - AO353_00835 0.20 +0.2 191,073 - AO353_00835 0.20 -1.0
Or see this region's nucleotide sequence