Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09565

Experiment: N-Acetyl-D-glucosamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS09560 and ABZR86_RS09565 are separated by 54 nucleotidesABZR86_RS09565 and ABZR86_RS09570 are separated by 371 nucleotidesABZR86_RS09570 and ABZR86_RS09575 are separated by 5 nucleotides ABZR86_RS09560: ABZR86_RS09560 - RtcB family protein, at 2,131,583 to 2,132,794 _RS09560 ABZR86_RS09565: ABZR86_RS09565 - slipin family protein, at 2,132,849 to 2,133,973 _RS09565 ABZR86_RS09570: ABZR86_RS09570 - tRNA-Val, at 2,134,345 to 2,134,415 _RS09570 ABZR86_RS09575: ABZR86_RS09575 - tRNA-Ala, at 2,134,421 to 2,134,491 _RS09575 Position (kb) 2132 2133 2134Strain fitness (log2 ratio) -1 0 1at 2131.849 kb on - strand, within ABZR86_RS09560at 2131.849 kb on - strand, within ABZR86_RS09560at 2131.849 kb on - strand, within ABZR86_RS09560at 2131.849 kb on - strand, within ABZR86_RS09560at 2131.849 kb on - strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.962 kb on + strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2131.963 kb on - strand, within ABZR86_RS09560at 2132.100 kb on + strand, within ABZR86_RS09560at 2132.100 kb on + strand, within ABZR86_RS09560at 2132.101 kb on - strand, within ABZR86_RS09560at 2132.208 kb on + strand, within ABZR86_RS09560at 2132.208 kb on + strand, within ABZR86_RS09560at 2132.209 kb on - strand, within ABZR86_RS09560at 2132.209 kb on - strand, within ABZR86_RS09560at 2132.209 kb on - strand, within ABZR86_RS09560at 2132.209 kb on - strand, within ABZR86_RS09560at 2132.686 kb on + strandat 2132.687 kb on - strandat 2132.768 kb on + strandat 2132.769 kb on - strandat 2132.789 kb on - strandat 2132.850 kb on + strandat 2132.851 kb on - strandat 2133.168 kb on + strand, within ABZR86_RS09565at 2133.174 kb on + strand, within ABZR86_RS09565at 2133.174 kb on + strand, within ABZR86_RS09565at 2133.174 kb on + strand, within ABZR86_RS09565at 2133.175 kb on - strand, within ABZR86_RS09565at 2133.258 kb on + strand, within ABZR86_RS09565at 2133.274 kb on - strand, within ABZR86_RS09565at 2133.279 kb on + strand, within ABZR86_RS09565at 2133.280 kb on - strand, within ABZR86_RS09565at 2133.280 kb on - strand, within ABZR86_RS09565at 2133.280 kb on - strand, within ABZR86_RS09565at 2133.280 kb on - strand, within ABZR86_RS09565at 2133.280 kb on - strand, within ABZR86_RS09565at 2133.288 kb on + strand, within ABZR86_RS09565at 2133.465 kb on + strand, within ABZR86_RS09565at 2133.465 kb on + strand, within ABZR86_RS09565at 2133.663 kb on + strand, within ABZR86_RS09565at 2134.014 kb on - strandat 2134.014 kb on - strandat 2134.014 kb on - strandat 2134.065 kb on - strandat 2134.133 kb on + strandat 2134.483 kb on + strand, within ABZR86_RS09575at 2134.484 kb on - strand, within ABZR86_RS09575at 2134.484 kb on - strand, within ABZR86_RS09575at 2134.484 kb on - strand, within ABZR86_RS09575at 2134.522 kb on + strandat 2134.523 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
remove
2,131,849 - ABZR86_RS09560 0.22 -0.2
2,131,849 - ABZR86_RS09560 0.22 +0.0
2,131,849 - ABZR86_RS09560 0.22 +0.4
2,131,849 - ABZR86_RS09560 0.22 +0.0
2,131,849 - ABZR86_RS09560 0.22 +1.4
2,131,962 + ABZR86_RS09560 0.31 -0.1
2,131,962 + ABZR86_RS09560 0.31 +0.2
2,131,962 + ABZR86_RS09560 0.31 +0.4
2,131,962 + ABZR86_RS09560 0.31 +0.3
2,131,962 + ABZR86_RS09560 0.31 -0.3
2,131,962 + ABZR86_RS09560 0.31 -1.5
2,131,962 + ABZR86_RS09560 0.31 +0.7
2,131,962 + ABZR86_RS09560 0.31 -0.9
2,131,962 + ABZR86_RS09560 0.31 -0.4
2,131,962 + ABZR86_RS09560 0.31 +0.0
2,131,962 + ABZR86_RS09560 0.31 +0.1
2,131,962 + ABZR86_RS09560 0.31 -0.9
2,131,962 + ABZR86_RS09560 0.31 +0.1
2,131,963 - ABZR86_RS09560 0.31 -0.3
2,131,963 - ABZR86_RS09560 0.31 -1.2
2,131,963 - ABZR86_RS09560 0.31 -0.1
2,131,963 - ABZR86_RS09560 0.31 -0.8
2,131,963 - ABZR86_RS09560 0.31 -0.7
2,131,963 - ABZR86_RS09560 0.31 -0.4
2,131,963 - ABZR86_RS09560 0.31 +0.0
2,131,963 - ABZR86_RS09560 0.31 -0.3
2,132,100 + ABZR86_RS09560 0.43 -1.0
2,132,100 + ABZR86_RS09560 0.43 -0.5
2,132,101 - ABZR86_RS09560 0.43 -0.4
2,132,208 + ABZR86_RS09560 0.52 -0.3
2,132,208 + ABZR86_RS09560 0.52 -0.9
2,132,209 - ABZR86_RS09560 0.52 -0.3
2,132,209 - ABZR86_RS09560 0.52 -0.2
2,132,209 - ABZR86_RS09560 0.52 -1.0
2,132,209 - ABZR86_RS09560 0.52 -0.6
2,132,686 + -0.3
2,132,687 - -0.4
2,132,768 + +0.1
2,132,769 - -1.0
2,132,789 - +0.1
2,132,850 + -0.2
2,132,851 - -0.5
2,133,168 + ABZR86_RS09565 0.28 -0.7
2,133,174 + ABZR86_RS09565 0.29 -0.0
2,133,174 + ABZR86_RS09565 0.29 +0.5
2,133,174 + ABZR86_RS09565 0.29 +0.6
2,133,175 - ABZR86_RS09565 0.29 +0.2
2,133,258 + ABZR86_RS09565 0.36 +0.6
2,133,274 - ABZR86_RS09565 0.38 -1.3
2,133,279 + ABZR86_RS09565 0.38 -0.2
2,133,280 - ABZR86_RS09565 0.38 -0.5
2,133,280 - ABZR86_RS09565 0.38 +0.0
2,133,280 - ABZR86_RS09565 0.38 -0.4
2,133,280 - ABZR86_RS09565 0.38 -1.2
2,133,280 - ABZR86_RS09565 0.38 +0.6
2,133,288 + ABZR86_RS09565 0.39 -0.1
2,133,465 + ABZR86_RS09565 0.55 -0.0
2,133,465 + ABZR86_RS09565 0.55 -0.9
2,133,663 + ABZR86_RS09565 0.72 +0.4
2,134,014 - +0.4
2,134,014 - -0.2
2,134,014 - +0.1
2,134,065 - -0.1
2,134,133 + +0.5
2,134,483 + ABZR86_RS09575 0.87 +1.6
2,134,484 - ABZR86_RS09575 0.89 +0.3
2,134,484 - ABZR86_RS09575 0.89 +0.2
2,134,484 - ABZR86_RS09575 0.89 +0.7
2,134,522 + +0.0
2,134,523 - +0.3

Or see this region's nucleotide sequence