Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05600

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05585 and ABZR86_RS05590 are separated by 76 nucleotidesABZR86_RS05590 and ABZR86_RS05595 are separated by 274 nucleotidesABZR86_RS05595 and ABZR86_RS05600 overlap by 4 nucleotidesABZR86_RS05600 and ABZR86_RS05605 are separated by 1 nucleotides ABZR86_RS05585: ABZR86_RS05585 - LysR substrate-binding domain-containing protein, at 1,262,751 to 1,263,665 _RS05585 ABZR86_RS05590: ABZR86_RS05590 - type B 50S ribosomal protein L36, at 1,263,742 to 1,263,867 _RS05590 ABZR86_RS05595: ABZR86_RS05595 - transcription elongation factor GreA, at 1,264,142 to 1,264,618 _RS05595 ABZR86_RS05600: ABZR86_RS05600 - carbamoyl-phosphate synthase large subunit, at 1,264,615 to 1,267,842 _RS05600 ABZR86_RS05605: ABZR86_RS05605 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 1,267,844 to 1,268,971 _RS05605 Position (kb) 1264 1265 1266 1267 1268Strain fitness (log2 ratio) -1 0 1at 1263.622 kb on + strandat 1263.623 kb on - strandat 1263.671 kb on + strandat 1263.671 kb on + strandat 1263.671 kb on + strandat 1263.671 kb on + strandat 1263.672 kb on - strandat 1263.672 kb on - strandat 1263.888 kb on + strandat 1263.889 kb on - strandat 1263.889 kb on - strandat 1263.889 kb on - strandat 1263.889 kb on - strandat 1263.889 kb on - strandat 1263.918 kb on - strandat 1263.933 kb on + strandat 1263.996 kb on + strandat 1264.012 kb on - strandat 1264.149 kb on + strandat 1264.149 kb on + strandat 1264.149 kb on + strandat 1264.149 kb on + strandat 1264.150 kb on - strandat 1264.150 kb on - strandat 1264.150 kb on - strandat 1264.150 kb on - strandat 1264.150 kb on - strandat 1264.150 kb on - strandat 1264.150 kb on - strandat 1264.150 kb on - strandat 1264.170 kb on + strandat 1264.170 kb on + strandat 1264.170 kb on + strandat 1264.170 kb on + strandat 1264.170 kb on + strandat 1264.170 kb on + strandat 1264.170 kb on + strandat 1264.171 kb on - strandat 1264.171 kb on - strandat 1264.171 kb on - strandat 1264.305 kb on + strand, within ABZR86_RS05595at 1264.305 kb on + strand, within ABZR86_RS05595at 1264.305 kb on + strand, within ABZR86_RS05595at 1264.306 kb on - strand, within ABZR86_RS05595at 1264.306 kb on - strand, within ABZR86_RS05595at 1264.306 kb on - strand, within ABZR86_RS05595at 1264.306 kb on - strand, within ABZR86_RS05595at 1264.477 kb on - strand, within ABZR86_RS05595at 1268.499 kb on - strand, within ABZR86_RS05605

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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1,263,622 + -0.0
1,263,623 - +0.0
1,263,671 + +0.3
1,263,671 + -0.1
1,263,671 + +0.5
1,263,671 + +1.2
1,263,672 - +0.7
1,263,672 - +0.0
1,263,888 + -1.0
1,263,889 - -0.0
1,263,889 - -0.1
1,263,889 - -1.1
1,263,889 - +0.3
1,263,889 - -0.5
1,263,918 - -0.1
1,263,933 + -0.0
1,263,996 + -0.1
1,264,012 - +0.2
1,264,149 + -0.3
1,264,149 + -0.6
1,264,149 + -1.1
1,264,149 + +0.4
1,264,150 - -0.2
1,264,150 - +1.6
1,264,150 - -0.6
1,264,150 - -0.8
1,264,150 - +0.4
1,264,150 - +0.4
1,264,150 - +1.4
1,264,150 - -0.5
1,264,170 + -1.0
1,264,170 + +0.3
1,264,170 + +0.1
1,264,170 + +0.5
1,264,170 + +1.3
1,264,170 + -0.1
1,264,170 + -0.6
1,264,171 - +0.6
1,264,171 - +0.0
1,264,171 - -0.7
1,264,305 + ABZR86_RS05595 0.34 +0.2
1,264,305 + ABZR86_RS05595 0.34 +0.3
1,264,305 + ABZR86_RS05595 0.34 -0.3
1,264,306 - ABZR86_RS05595 0.34 +0.2
1,264,306 - ABZR86_RS05595 0.34 +0.4
1,264,306 - ABZR86_RS05595 0.34 +0.7
1,264,306 - ABZR86_RS05595 0.34 +0.7
1,264,477 - ABZR86_RS05595 0.70 +0.6
1,268,499 - ABZR86_RS05605 0.58 -0.6

Or see this region's nucleotide sequence