Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05350

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05345 and ABZR86_RS05350 are separated by 166 nucleotidesABZR86_RS05350 and ABZR86_RS05355 are separated by 19 nucleotidesABZR86_RS05355 and ABZR86_RS05360 are separated by 149 nucleotides ABZR86_RS05345: ABZR86_RS05345 - NAD-dependent protein deacetylase, at 1,201,424 to 1,202,266 _RS05345 ABZR86_RS05350: ABZR86_RS05350 - CHAD domain-containing protein, at 1,202,433 to 1,203,344 _RS05350 ABZR86_RS05355: ABZR86_RS05355 - tRNA adenosine(34) deaminase TadA, at 1,203,364 to 1,203,855 _RS05355 ABZR86_RS05360: ABZR86_RS05360 - AlpA family transcriptional regulator, at 1,204,005 to 1,204,529 _RS05360 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -1 0 1at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.738 kb on - strand, within ABZR86_RS05345at 1201.738 kb on - strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1202.185 kb on + strandat 1202.186 kb on - strandat 1202.258 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.302 kb on + strandat 1202.302 kb on + strandat 1202.532 kb on + strand, within ABZR86_RS05350at 1202.532 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.717 kb on + strand, within ABZR86_RS05350at 1202.717 kb on + strand, within ABZR86_RS05350at 1202.717 kb on + strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1203.075 kb on + strand, within ABZR86_RS05350at 1203.076 kb on - strand, within ABZR86_RS05350at 1203.076 kb on - strand, within ABZR86_RS05350at 1203.196 kb on + strand, within ABZR86_RS05350at 1203.196 kb on + strand, within ABZR86_RS05350at 1203.197 kb on - strand, within ABZR86_RS05350at 1203.197 kb on - strand, within ABZR86_RS05350at 1203.197 kb on - strand, within ABZR86_RS05350at 1203.361 kb on + strandat 1203.879 kb on - strandat 1203.879 kb on - strandat 1203.879 kb on - strandat 1203.890 kb on + strandat 1203.890 kb on + strandat 1203.890 kb on + strandat 1203.891 kb on - strandat 1204.123 kb on + strand, within ABZR86_RS05360at 1204.124 kb on - strand, within ABZR86_RS05360at 1204.124 kb on - strand, within ABZR86_RS05360at 1204.124 kb on - strand, within ABZR86_RS05360at 1204.124 kb on - strand, within ABZR86_RS05360

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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1,201,601 + ABZR86_RS05345 0.21 +0.1
1,201,601 + ABZR86_RS05345 0.21 -0.7
1,201,601 + ABZR86_RS05345 0.21 +1.4
1,201,601 + ABZR86_RS05345 0.21 -0.0
1,201,601 + ABZR86_RS05345 0.21 +0.3
1,201,602 - ABZR86_RS05345 0.21 -0.2
1,201,602 - ABZR86_RS05345 0.21 +0.4
1,201,602 - ABZR86_RS05345 0.21 +1.0
1,201,602 - ABZR86_RS05345 0.21 -0.0
1,201,602 - ABZR86_RS05345 0.21 +0.0
1,201,737 + ABZR86_RS05345 0.37 -0.6
1,201,737 + ABZR86_RS05345 0.37 +0.5
1,201,737 + ABZR86_RS05345 0.37 -0.7
1,201,737 + ABZR86_RS05345 0.37 +0.2
1,201,737 + ABZR86_RS05345 0.37 -0.6
1,201,738 - ABZR86_RS05345 0.37 -0.7
1,201,738 - ABZR86_RS05345 0.37 -0.6
1,201,920 + ABZR86_RS05345 0.59 -1.0
1,201,920 + ABZR86_RS05345 0.59 -0.2
1,201,920 + ABZR86_RS05345 0.59 +0.3
1,201,920 + ABZR86_RS05345 0.59 -0.7
1,201,921 - ABZR86_RS05345 0.59 +0.2
1,201,921 - ABZR86_RS05345 0.59 +0.1
1,201,921 - ABZR86_RS05345 0.59 -0.2
1,201,921 - ABZR86_RS05345 0.59 -0.2
1,202,185 + +0.5
1,202,186 - -1.0
1,202,258 - -0.8
1,202,295 - -0.4
1,202,295 - +0.2
1,202,295 - +1.2
1,202,295 - -0.3
1,202,302 + +0.0
1,202,302 + +1.1
1,202,532 + ABZR86_RS05350 0.11 +0.2
1,202,532 + ABZR86_RS05350 0.11 -0.8
1,202,586 + ABZR86_RS05350 0.17 +0.4
1,202,586 + ABZR86_RS05350 0.17 +0.5
1,202,586 + ABZR86_RS05350 0.17 +0.5
1,202,586 + ABZR86_RS05350 0.17 -0.6
1,202,717 + ABZR86_RS05350 0.31 +0.3
1,202,717 + ABZR86_RS05350 0.31 -0.1
1,202,717 + ABZR86_RS05350 0.31 +0.4
1,202,718 - ABZR86_RS05350 0.31 +0.7
1,202,718 - ABZR86_RS05350 0.31 -0.4
1,202,718 - ABZR86_RS05350 0.31 -0.4
1,202,718 - ABZR86_RS05350 0.31 -0.3
1,202,718 - ABZR86_RS05350 0.31 -0.0
1,203,075 + ABZR86_RS05350 0.70 -1.2
1,203,076 - ABZR86_RS05350 0.71 -0.6
1,203,076 - ABZR86_RS05350 0.71 +1.7
1,203,196 + ABZR86_RS05350 0.84 -0.5
1,203,196 + ABZR86_RS05350 0.84 -0.6
1,203,197 - ABZR86_RS05350 0.84 -0.2
1,203,197 - ABZR86_RS05350 0.84 -0.3
1,203,197 - ABZR86_RS05350 0.84 +0.1
1,203,361 + -0.0
1,203,879 - -0.3
1,203,879 - -0.1
1,203,879 - +0.5
1,203,890 + +0.5
1,203,890 + +0.1
1,203,890 + +0.2
1,203,891 - -0.6
1,204,123 + ABZR86_RS05360 0.22 +0.1
1,204,124 - ABZR86_RS05360 0.23 +0.4
1,204,124 - ABZR86_RS05360 0.23 -0.8
1,204,124 - ABZR86_RS05360 0.23 +0.0
1,204,124 - ABZR86_RS05360 0.23 +0.3

Or see this region's nucleotide sequence