Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05180

Experiment: N-Acetyl-D-glucosamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS05175 and ABZR86_RS05180 are separated by 63 nucleotidesABZR86_RS05180 and ABZR86_RS05185 are separated by 53 nucleotides ABZR86_RS05175: ABZR86_RS05175 - alpha/beta hydrolase, at 1,171,298 to 1,172,125 _RS05175 ABZR86_RS05180: ABZR86_RS05180 - hypothetical protein, at 1,172,189 to 1,172,479 _RS05180 ABZR86_RS05185: ABZR86_RS05185 - amino acid permease, at 1,172,533 to 1,173,897 _RS05185 Position (kb) 1172 1173Strain fitness (log2 ratio) -2 -1 0 1at 1171.266 kb on + strandat 1171.266 kb on + strandat 1171.266 kb on + strandat 1171.267 kb on - strandat 1171.267 kb on - strandat 1171.267 kb on - strandat 1171.518 kb on - strand, within ABZR86_RS05175at 1171.518 kb on - strand, within ABZR86_RS05175at 1171.610 kb on + strand, within ABZR86_RS05175at 1171.610 kb on + strand, within ABZR86_RS05175at 1171.610 kb on + strand, within ABZR86_RS05175at 1171.610 kb on + strand, within ABZR86_RS05175at 1171.610 kb on + strand, within ABZR86_RS05175at 1171.610 kb on + strand, within ABZR86_RS05175at 1171.610 kb on + strand, within ABZR86_RS05175at 1171.793 kb on + strand, within ABZR86_RS05175at 1171.794 kb on - strand, within ABZR86_RS05175at 1171.884 kb on - strand, within ABZR86_RS05175at 1171.884 kb on - strand, within ABZR86_RS05175at 1171.988 kb on + strand, within ABZR86_RS05175at 1172.095 kb on + strandat 1172.096 kb on - strandat 1172.193 kb on + strandat 1172.194 kb on - strandat 1172.194 kb on - strandat 1172.194 kb on - strandat 1172.413 kb on - strand, within ABZR86_RS05180at 1172.413 kb on - strand, within ABZR86_RS05180at 1172.413 kb on - strand, within ABZR86_RS05180at 1172.415 kb on + strand, within ABZR86_RS05180at 1172.416 kb on - strand, within ABZR86_RS05180at 1172.416 kb on - strand, within ABZR86_RS05180at 1172.416 kb on - strand, within ABZR86_RS05180at 1172.506 kb on + strandat 1172.506 kb on + strandat 1172.507 kb on - strandat 1172.534 kb on + strandat 1172.534 kb on + strandat 1172.534 kb on + strandat 1172.535 kb on - strandat 1172.567 kb on + strandat 1172.567 kb on + strandat 1172.568 kb on - strandat 1172.568 kb on - strandat 1172.570 kb on + strandat 1172.571 kb on - strandat 1172.571 kb on - strandat 1172.653 kb on + strandat 1172.654 kb on - strandat 1172.682 kb on - strand, within ABZR86_RS05185at 1172.690 kb on + strand, within ABZR86_RS05185at 1172.690 kb on + strand, within ABZR86_RS05185at 1172.690 kb on + strand, within ABZR86_RS05185at 1172.690 kb on + strand, within ABZR86_RS05185at 1172.753 kb on + strand, within ABZR86_RS05185at 1172.754 kb on - strand, within ABZR86_RS05185at 1172.849 kb on + strand, within ABZR86_RS05185at 1172.850 kb on - strand, within ABZR86_RS05185at 1172.850 kb on - strand, within ABZR86_RS05185at 1172.850 kb on - strand, within ABZR86_RS05185at 1172.990 kb on + strand, within ABZR86_RS05185at 1172.991 kb on - strand, within ABZR86_RS05185at 1172.991 kb on - strand, within ABZR86_RS05185at 1172.991 kb on - strand, within ABZR86_RS05185at 1172.995 kb on - strand, within ABZR86_RS05185at 1173.125 kb on + strand, within ABZR86_RS05185at 1173.126 kb on - strand, within ABZR86_RS05185at 1173.126 kb on - strand, within ABZR86_RS05185at 1173.158 kb on + strand, within ABZR86_RS05185at 1173.158 kb on + strand, within ABZR86_RS05185at 1173.158 kb on + strand, within ABZR86_RS05185at 1173.158 kb on + strand, within ABZR86_RS05185at 1173.159 kb on - strand, within ABZR86_RS05185at 1173.465 kb on - strand, within ABZR86_RS05185at 1173.465 kb on - strand, within ABZR86_RS05185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
remove
1,171,266 + -0.3
1,171,266 + +0.0
1,171,266 + -0.5
1,171,267 - +1.2
1,171,267 - +0.4
1,171,267 - +1.3
1,171,518 - ABZR86_RS05175 0.27 -0.1
1,171,518 - ABZR86_RS05175 0.27 +0.1
1,171,610 + ABZR86_RS05175 0.38 -0.0
1,171,610 + ABZR86_RS05175 0.38 +0.3
1,171,610 + ABZR86_RS05175 0.38 +0.5
1,171,610 + ABZR86_RS05175 0.38 -0.5
1,171,610 + ABZR86_RS05175 0.38 +0.4
1,171,610 + ABZR86_RS05175 0.38 -0.8
1,171,610 + ABZR86_RS05175 0.38 -0.1
1,171,793 + ABZR86_RS05175 0.60 -0.0
1,171,794 - ABZR86_RS05175 0.60 -0.4
1,171,884 - ABZR86_RS05175 0.71 +0.2
1,171,884 - ABZR86_RS05175 0.71 +0.2
1,171,988 + ABZR86_RS05175 0.83 -0.0
1,172,095 + -2.0
1,172,096 - +0.4
1,172,193 + +0.3
1,172,194 - -0.6
1,172,194 - -0.0
1,172,194 - -0.2
1,172,413 - ABZR86_RS05180 0.77 +0.1
1,172,413 - ABZR86_RS05180 0.77 +0.1
1,172,413 - ABZR86_RS05180 0.77 -0.9
1,172,415 + ABZR86_RS05180 0.78 +0.1
1,172,416 - ABZR86_RS05180 0.78 -0.7
1,172,416 - ABZR86_RS05180 0.78 -0.0
1,172,416 - ABZR86_RS05180 0.78 -0.9
1,172,506 + +0.2
1,172,506 + +1.0
1,172,507 - -0.4
1,172,534 + -0.7
1,172,534 + -0.1
1,172,534 + -0.2
1,172,535 - +0.6
1,172,567 + -0.4
1,172,567 + -0.3
1,172,568 - -0.5
1,172,568 - -0.1
1,172,570 + +1.3
1,172,571 - +0.1
1,172,571 - +0.2
1,172,653 + +0.6
1,172,654 - -1.0
1,172,682 - ABZR86_RS05185 0.11 -0.5
1,172,690 + ABZR86_RS05185 0.12 +0.3
1,172,690 + ABZR86_RS05185 0.12 -0.4
1,172,690 + ABZR86_RS05185 0.12 -0.5
1,172,690 + ABZR86_RS05185 0.12 +0.4
1,172,753 + ABZR86_RS05185 0.16 +0.5
1,172,754 - ABZR86_RS05185 0.16 +0.6
1,172,849 + ABZR86_RS05185 0.23 +1.1
1,172,850 - ABZR86_RS05185 0.23 -0.1
1,172,850 - ABZR86_RS05185 0.23 +0.5
1,172,850 - ABZR86_RS05185 0.23 -0.0
1,172,990 + ABZR86_RS05185 0.33 +0.6
1,172,991 - ABZR86_RS05185 0.34 -0.3
1,172,991 - ABZR86_RS05185 0.34 +0.6
1,172,991 - ABZR86_RS05185 0.34 -0.4
1,172,995 - ABZR86_RS05185 0.34 -0.0
1,173,125 + ABZR86_RS05185 0.43 -0.1
1,173,126 - ABZR86_RS05185 0.43 -0.5
1,173,126 - ABZR86_RS05185 0.43 +0.0
1,173,158 + ABZR86_RS05185 0.46 +0.5
1,173,158 + ABZR86_RS05185 0.46 +1.0
1,173,158 + ABZR86_RS05185 0.46 -0.8
1,173,158 + ABZR86_RS05185 0.46 +0.6
1,173,159 - ABZR86_RS05185 0.46 -0.2
1,173,465 - ABZR86_RS05185 0.68 +0.1
1,173,465 - ABZR86_RS05185 0.68 +0.1

Or see this region's nucleotide sequence