Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3873

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,649,754	+	potE	Shewana3_3872	0.40	+0.0
4,649,762	-	potE	Shewana3_3872	0.40	+0.1
4,649,797	+	potE	Shewana3_3872	0.43	-0.5
4,649,874	+	potE	Shewana3_3872	0.49	-0.0
4,649,937	-	potE	Shewana3_3872	0.54	-1.9
4,650,018	-	potE	Shewana3_3872	0.60	-0.3
4,650,075	+	potE	Shewana3_3872	0.64	-0.6
4,650,077	+	potE	Shewana3_3872	0.64	-0.0
4,650,083	-	potE	Shewana3_3872	0.65	-0.4
4,650,130	+	potE	Shewana3_3872	0.68	+0.3
4,650,131	-	potE	Shewana3_3872	0.68	-1.3
4,650,153	-	potE	Shewana3_3872	0.70	-0.7
4,650,160	+	potE	Shewana3_3872	0.70	-0.4
4,650,171	+	potE	Shewana3_3872	0.71	+0.5
4,650,278	-	potE	Shewana3_3872	0.79	-1.1
4,650,321	-	potE	Shewana3_3872	0.83	-1.0
4,650,385	-	potE	Shewana3_3872	0.88	-1.2
4,650,415	+	potE	Shewana3_3872	0.90	-0.5
4,650,417	+	potE	Shewana3_3872	0.90	-0.4
4,650,433	+				+0.2
4,650,441	-				+0.4
4,650,441	-				-0.6
4,650,443	-				-0.7
4,650,534	+				-0.7
4,650,534	+				-0.3
4,650,561	-				-0.2
4,650,617	+				-0.4
4,650,625	-				-0.5
4,650,625	-				-0.8
4,650,625	-				-0.6
4,650,835	+		Shewana3_3873	0.14	+0.9
4,650,855	+		Shewana3_3873	0.16	+0.2
4,650,994	+		Shewana3_3873	0.28	+1.5
4,651,163	-		Shewana3_3873	0.42	-1.6
4,651,205	+		Shewana3_3873	0.46	+0.0
4,651,319	+		Shewana3_3873	0.56	+0.2
4,651,319	+		Shewana3_3873	0.56	+1.5
4,651,444	+		Shewana3_3873	0.67	-0.2
4,651,707	-		Shewana3_3873	0.89	+0.4
4,651,854	+				-0.2
4,651,912	+				+0.2
4,651,984	+				-0.1
4,651,984	+				+0.1
4,652,087	+				+1.4
4,652,087	+				-0.3
4,652,087	+				+1.0
4,652,087	+				-2.7
4,652,087	+				+0.7
4,652,095	-				-0.4
4,652,095	-				+1.3
4,652,095	-				+0.0
4,652,095	-				+0.5
4,652,095	-				+1.3
4,652,095	-				-0.1
4,652,095	-				+0.2
4,652,095	-				+0.1
4,652,156	+				+0.1
4,652,200	-				+0.1
4,652,254	-				-0.4
4,652,289	-		Shewana3_3874	0.11	-0.6
4,652,369	-		Shewana3_3874	0.14	-0.6
4,652,409	-		Shewana3_3874	0.16	+0.2
4,652,541	-		Shewana3_3874	0.22	-0.2
4,652,603	+		Shewana3_3874	0.24	-0.4
4,652,619	+		Shewana3_3874	0.25	+0.7
4,652,627	-		Shewana3_3874	0.25	-0.1
4,652,627	-		Shewana3_3874	0.25	-0.5
4,652,644	-		Shewana3_3874	0.26	-0.2
4,652,695	+		Shewana3_3874	0.28	-0.7
4,652,698	-		Shewana3_3874	0.28	-0.4
4,652,805	+		Shewana3_3874	0.33	-0.0