Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3855

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,629,369	+		Shewana3_3854	0.53	-0.4
4,629,425	+		Shewana3_3854	0.56	-0.7
4,629,593	+		Shewana3_3854	0.64	-0.5
4,629,678	+		Shewana3_3854	0.68	-0.2
4,629,705	-		Shewana3_3854	0.69	-0.0
4,629,745	+		Shewana3_3854	0.71	-0.3
4,629,778	+		Shewana3_3854	0.73	-0.4
4,629,784	-		Shewana3_3854	0.73	-0.3
4,629,784	-		Shewana3_3854	0.73	+0.1
4,629,791	+		Shewana3_3854	0.73	-0.6
4,629,791	+		Shewana3_3854	0.73	-0.6
4,629,799	-		Shewana3_3854	0.74	+1.2
4,629,799	-		Shewana3_3854	0.74	-2.1
4,629,889	+		Shewana3_3854	0.78	+1.1
4,629,907	+		Shewana3_3854	0.79	-1.5
4,629,970	+		Shewana3_3854	0.82	+0.3
4,629,978	-		Shewana3_3854	0.82	+0.2
4,629,990	-		Shewana3_3854	0.83	-0.6
4,629,990	-		Shewana3_3854	0.83	-0.1
4,630,017	-		Shewana3_3854	0.84	-0.0
4,630,251	+				-0.9
4,630,254	-				-0.6
4,630,268	-				-1.4
4,630,285	+				-1.4
4,630,285	+				+0.4
4,630,285	+				-0.8
4,630,293	-				+0.1
4,630,311	-				-0.1
4,630,384	-				-0.2
4,630,530	+		Shewana3_3855	0.15	-0.6
4,630,573	+		Shewana3_3855	0.18	-0.2
4,630,612	-		Shewana3_3855	0.21	-0.3
4,630,634	-		Shewana3_3855	0.23	-1.1
4,630,634	-		Shewana3_3855	0.23	-0.1
4,630,667	+		Shewana3_3855	0.26	-2.3
4,630,869	+		Shewana3_3855	0.42	+1.0
4,630,901	-		Shewana3_3855	0.45	+0.0
4,630,934	-		Shewana3_3855	0.47	+1.3
4,630,959	+		Shewana3_3855	0.49	-0.4
4,630,967	-		Shewana3_3855	0.50	-0.2
4,630,967	-		Shewana3_3855	0.50	+1.3
4,630,971	-		Shewana3_3855	0.50	-0.1
4,631,099	+		Shewana3_3855	0.61	-0.9
4,631,157	-		Shewana3_3855	0.65	-0.6
4,631,220	+		Shewana3_3855	0.71	-1.6
4,631,252	+		Shewana3_3855	0.73	-0.4
4,631,317	-		Shewana3_3855	0.78	+0.5
4,631,361	-		Shewana3_3855	0.82	-0.2
4,631,461	-				-0.7
4,631,747	-				-0.5
4,631,925	-				+0.2
4,631,925	-				+0.8
4,632,166	-		Shewana3_3856	0.23	+0.0
4,632,263	-		Shewana3_3856	0.29	-0.1
4,632,270	-		Shewana3_3856	0.30	-0.2
4,632,528	-		Shewana3_3856	0.48	-0.2
4,632,557	+		Shewana3_3856	0.50	-0.2
4,632,557	+		Shewana3_3856	0.50	-0.4
4,632,557	+		Shewana3_3856	0.50	+0.2
4,632,579	-		Shewana3_3856	0.51	+1.4