Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3616

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,341,756	+		Shewana3_3614	0.80	-0.5
4,341,787	+		Shewana3_3614	0.83	+0.8
4,341,910	-				-0.3
4,341,939	+				-0.6
4,341,994	+				-0.0
4,342,141	+				-0.7
4,342,234	-		Shewana3_3615	0.13	-0.7
4,342,334	+		Shewana3_3615	0.45	-1.6
4,342,470	-		Shewana3_3615	0.88	+0.0
4,342,509	-				+1.2
4,342,672	-				+3.0
4,342,696	+		Shewana3_3616	0.11	-0.2
4,342,704	-		Shewana3_3616	0.12	+1.7
4,342,704	-		Shewana3_3616	0.12	+0.1
4,342,727	+		Shewana3_3616	0.15	+0.0
4,342,730	+		Shewana3_3616	0.16	-0.3
4,342,858	-		Shewana3_3616	0.33	+0.1
4,343,109	+		Shewana3_3616	0.67	-0.2
4,343,230	+		Shewana3_3616	0.83	+0.5
4,343,230	+		Shewana3_3616	0.83	-0.2
4,343,287	+				-0.4
4,343,287	+				+0.1
4,343,287	+				-0.5
4,343,287	+				-0.4
4,343,295	-				-0.1
4,343,295	-				-0.2
4,343,295	-				-0.6
4,343,311	+				-0.3
4,343,492	+				-0.7
4,343,668	+		Shewana3_3617	0.20	-0.6
4,343,676	-		Shewana3_3617	0.21	-0.1
4,343,676	-		Shewana3_3617	0.21	-0.5
4,343,679	+		Shewana3_3617	0.21	+0.6
4,343,709	+		Shewana3_3617	0.24	-1.7
4,343,710	+		Shewana3_3617	0.24	+0.6
4,343,724	+		Shewana3_3617	0.26	-2.9
4,343,724	+		Shewana3_3617	0.26	+0.1
4,343,732	-		Shewana3_3617	0.27	+0.1
4,343,732	-		Shewana3_3617	0.27	-0.3
4,343,773	+		Shewana3_3617	0.31	-0.2
4,343,773	+		Shewana3_3617	0.31	-1.4
4,343,773	+		Shewana3_3617	0.31	+0.0
4,343,773	+		Shewana3_3617	0.31	-0.4
4,343,781	-		Shewana3_3617	0.32	-2.1
4,343,817	+		Shewana3_3617	0.36	-1.8
4,343,833	-		Shewana3_3617	0.37	-0.7
4,343,872	-		Shewana3_3617	0.41	-0.3
4,343,906	+		Shewana3_3617	0.45	-1.0
4,343,912	-		Shewana3_3617	0.46	-1.1
4,343,957	-		Shewana3_3617	0.50	-0.5
4,344,136	+		Shewana3_3617	0.69	+1.1
4,344,270	-		Shewana3_3617	0.84	-0.3