Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3607

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,330,606	-				-0.6
4,330,657	-		Shewana3_3606	0.12	+0.1
4,330,657	-		Shewana3_3606	0.12	-0.9
4,330,733	-		Shewana3_3606	0.19	+0.2
4,330,783	-		Shewana3_3606	0.24	-0.8
4,330,786	+		Shewana3_3606	0.24	+0.1
4,330,803	+		Shewana3_3606	0.26	-0.7
4,330,811	-		Shewana3_3606	0.26	+0.1
4,330,812	-		Shewana3_3606	0.27	+0.0
4,330,861	+		Shewana3_3606	0.31	-0.0
4,330,861	+		Shewana3_3606	0.31	-1.5
4,330,869	-		Shewana3_3606	0.32	+0.3
4,330,894	-		Shewana3_3606	0.34	+0.1
4,330,903	+		Shewana3_3606	0.35	+0.0
4,330,918	-		Shewana3_3606	0.37	+0.1
4,330,997	-		Shewana3_3606	0.44	+0.6
4,331,011	-		Shewana3_3606	0.45	-0.6
4,331,056	-		Shewana3_3606	0.50	+0.2
4,331,087	+		Shewana3_3606	0.53	-0.4
4,331,092	-		Shewana3_3606	0.53	+0.3
4,331,129	-		Shewana3_3606	0.56	+0.9
4,331,129	-		Shewana3_3606	0.56	-0.0
4,331,129	-		Shewana3_3606	0.56	-0.3
4,331,164	-		Shewana3_3606	0.60	-0.3
4,331,165	-		Shewana3_3606	0.60	-0.3
4,331,165	-		Shewana3_3606	0.60	-0.2
4,331,211	+		Shewana3_3606	0.64	+0.8
4,331,219	-		Shewana3_3606	0.65	+0.2
4,331,338	+		Shewana3_3606	0.76	-0.6
4,331,346	-		Shewana3_3606	0.77	-0.1
4,331,492	-				+0.7
4,331,689	-		Shewana3_3607	0.14	-1.2
4,331,818	-		Shewana3_3607	0.35	-1.2
4,331,828	-		Shewana3_3607	0.36	-0.2
4,331,907	+		Shewana3_3607	0.49	-1.4
4,332,035	+		Shewana3_3607	0.69	-0.5
4,332,164	+				+0.3
4,332,164	+				+1.3
4,332,172	-				+0.1
4,332,172	-				-2.2
4,332,291	-				-0.7
4,332,381	-				-0.7
4,332,455	+				+0.5
4,332,599	+		Shewana3_3608	0.18	-0.5
4,332,604	+		Shewana3_3608	0.18	-0.7
4,332,632	+		Shewana3_3608	0.21	+0.8
4,332,651	+		Shewana3_3608	0.23	+0.3
4,332,691	-		Shewana3_3608	0.27	-0.6
4,332,696	-		Shewana3_3608	0.27	-0.8
4,332,798	+		Shewana3_3608	0.37	+1.7
4,332,801	-		Shewana3_3608	0.37	+0.1